PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33095_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 335aa    MW: 37477.9 Da    PI: 9.828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33095_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
   Neem_33095_f_2  5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPEfapflVHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.617161IPR017930Myb domain
SuperFamilySSF466891.87E-16258IPR009057Homeodomain-like
SMARTSM007174.1E-9459IPR001005SANT/Myb domain
PfamPF002491.1E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-15556IPR009057Homeodomain-like
CDDcd116601.05E-21656No hitNo description
SuperFamilySSF467851.14E-16113195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.4E-17114179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.67116184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-14116184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.3E-12118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPEFAPF LVHRSNIDLK DKWRNLSVST  60
AQQGSKDKSR VPKIKATTAT TLSNTPNSAP AAPLARNVSS GAAVNDPASS ALDGKNVPKY  120
NAMIFEAIST IKDTNGSDIS AIVNFIEERH EVPPNFRRLL SSRLRRLVSQ GKLEKVQNCY  180
KIRKDISLGV KTPTPKQKDA RLRLPQNSTL VKPSETVEEA SITAAYRIAE AENKSFLAAE  240
AVKEAERVSK LAEDTDAMLL LVHAVKLFFW LEQSIVCDRR KCNFRNVYVK FIDPVEVWNT  300
FRLLCTDVFS CIQDNVHLRS MTHEIECTNP FSSIK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426592.11e-148telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L17e-84TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2H5NF341e-157A0A2H5NF34_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006426592.11e-147(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]