PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32626_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 261aa    MW: 30372.3 Da    PI: 8.6784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32626_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.71.3e-3761302127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     ppGfrF Pt+eel+    + + ++ +  ++++i+ v+iy+++PwdLp+     ++ + ++w+fF++r+k++ +g r+nr t++gyWkatg+   v
  Neem_32626_f_1   6 PPGFRFYPTEEELL----EGRRQDLNRLMDRIIPVVNIYDYNPWDLPQfseyLCHRDPEQWFFFVPRQKNEVRGGRPNRLTTAGYWKATGSPGFV 96 
                     9************9....55555555555678**************9646653344667************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     +s +++++g k+t+vfy+grap+g+ktdW m+ey+
  Neem_32626_f_1  97 YS-SNRVIGEKRTMVFYRGRAPSGTKTDWKMNEYK 130
                     **.9999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-443159IPR003441NAC domain
PROSITE profilePS5100544.1015159IPR003441NAC domain
PfamPF023652.2E-176130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVEEYPPGFR FYPTEEELLE GRRQDLNRLM DRIIPVVNIY DYNPWDLPQF SEYLCHRDPE  60
QWFFFVPRQK NEVRGGRPNR LTTAGYWKAT GSPGFVYSSN RVIGEKRTMV FYRGRAPSGT  120
KTDWKMNEYK AIEKRANTST AATIPLARPE FSLCRLYKKS KCLRAFDRRP PPGVITGEPW  180
AQRVTHHGDD HIRQKGVDHH QTLQMAVAER ISSPESLSSE DGHGGQPPQI GERSNMVMNC  240
NNEAWREWEE YLDLFCGLRK G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-34616016169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481732.11e-101NAC domain-containing protein 90-like
TrEMBLA0A2H5MYF91e-100A0A2H5MYF9_CITUN; Uncharacterized protein
STRINGXP_006481732.11e-101(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101591034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-63NAC domain containing protein 90