PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_323_f_14

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 733aa MW: 84235.2 Da PI: 7.9984

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_323_f_14	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.6e-23	281	367	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r ++ + + r++r+etrtgC a++++ ++ +g+++vt++e++HnHe++ Neem_323_f_14 281 CYSRYAVLEGFSIRKDFVNKSRVNGVVVSRRYTCYRQGYRPAKHCA--NVRKPRQETRTGCLAHMTIARQPNGRFRVTHFETKHNHEFV 367 7***************************************9999..999**********************************97 PP
2	FAR1	91.1	1.5e-28	415	503	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l++++++dgk++vt++e++HnHel+ Neem_323_f_14 415 EFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVQRSRKETRIGCLAQLVISRQSDGKYRVTHFEEKHNHELV 503 6*****************************************999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-21	281	367	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-25	415	503	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MKREGRQHGM VRTYRIMPSP WNPKPETRLV NQFNSPPTCG LFTKVPKKPT NHSKFTGKCG 60 RPRCTGCHMH PAYDEMQEIM TYYDVGMVFD EVEGDEVIVK LYLNYCTFTV SSSLAINYFW 120 SKNGKKLLCT LKAILGFWEI EGKKRLMDGS ETDVPSLSTE EDVQISAGKD NDMGQEHESP 180 KDSSVGKSCE STDTERNCQS PSASSIDKSQ VETNEEECQK PGVSSTNNCE MDVDGEHKSQ 240 SSEFPRSDVS GAGIVIKDEE VTYVIPAVGM EFESEDHAYK CYSRYAVLEG FSIRKDFVNK 300 SRVNGVVVSR RYTCYRQGYR PAKHCANVRK PRQETRTGCL AHMTIARQPN GRFRVTHFET 360 KHNHEFVTQS TAHMLPSQKR LTFAQAVEAD LSNSSRMDGI PKLGMGFDSE DHAYEFYNAY 420 AGRVGFSVRK DYVNRSKIDG AVASRRFTCF REGFRQKDKR DLNVQRSRKE TRIGCLAQLV 480 ISRQSDGKYR VTHFEEKHNH ELVAACRVRT LRSQKKLAVS QVVEGNVQDV IKNQPKPTSE 540 LSHNSAGNEH GYNPIDYKSK EEEDFINAWK VMLDVYGLWK NEWLNEIFKD REKWAIAYRR 600 HIFCADIRTA QLSECFTANL RKHLKSDSDV ISFFKHLAKI VNDWHYKELE ANYDMSQHMP 660 RLIGDVIILK HAREVYTPKM FELFQQEYEK SLNIVVNQCT ERALLVFEYK DILAVDAARD 720 EAFQCGCTQI ILW

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MKREGRQHGM VRTYRIMPSP WNPKPETRLV NQFNSPPTCG LFTKVPKKPT NHSKFTGKCG  60
RPRCTGCHMH PAYDEMQEIM TYYDVGMVFD EVEGDEVIVK LYLNYCTFTV SSSLAINYFW  120
SKNGKKLLCT LKAILGFWEI EGKKRLMDGS ETDVPSLSTE EDVQISAGKD NDMGQEHESP  180
KDSSVGKSCE STDTERNCQS PSASSIDKSQ VETNEEECQK PGVSSTNNCE MDVDGEHKSQ  240
SSEFPRSDVS GAGIVIKDEE VTYVIPAVGM EFESEDHAYK CYSRYAVLEG FSIRKDFVNK  300
SRVNGVVVSR RYTCYRQGYR PAKHCANVRK PRQETRTGCL AHMTIARQPN GRFRVTHFET  360
KHNHEFVTQS TAHMLPSQKR LTFAQAVEAD LSNSSRMDGI PKLGMGFDSE DHAYEFYNAY  420
AGRVGFSVRK DYVNRSKIDG AVASRRFTCF REGFRQKDKR DLNVQRSRKE TRIGCLAQLV  480
ISRQSDGKYR VTHFEEKHNH ELVAACRVRT LRSQKKLAVS QVVEGNVQDV IKNQPKPTSE  540
LSHNSAGNEH GYNPIDYKSK EEEDFINAWK VMLDVYGLWK NEWLNEIFKD REKWAIAYRR  600
HIFCADIRTA QLSECFTANL RKHLKSDSDV ISFFKHLAKI VNDWHYKELE ANYDMSQHMP  660
RLIGDVIILK HAREVYTPKM FELFQQEYEK SLNIVVNQCT ERALLVFEYK DILAVDAARD  720
EAFQCGCTQI ILW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469958.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_006469959.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X2
Refseq	XP_024046859.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4U8H4	0.0	V4U8H4_9ROSI; Uncharacterized protein
STRING	XP_006469958.1	0.0	(Citrus sinensis)
STRING	XP_006447184.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2076	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-30	FAR1-related sequence 7