PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3211_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 207aa    MW: 22832.5 Da    PI: 8.8546
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3211_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-10122161440
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                     k+ rr+++NReAAr+sR+RKka++++Le+   + ++Le+
  Neem_3211_f_4 122 QKALRRLAQNREAARKSRLRKKAYVQQLENsrlRLAQLEQ 161
                    5889*************************83334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-8115165No hitNo description
SMARTSM003380.0016119172IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.301121165IPR004827Basic-leucine zipper domain
PfamPF001708.6E-7123162IPR004827Basic-leucine zipper domain
CDDcd147089.66E-23123175No hitNo description
SuperFamilySSF579598.04E-7123165No hitNo description
PROSITE patternPS000360126141IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQSFKPAPTN PEIFCHSSFF LRFSWVDEKS IGCSAEIVAT TGPGGCLDTG QFMYQKGTTI  60
GSSLGNGHIE NWGESGMADN SQQTDTSTDV DTDDKNQIHG VKRRAPAVLD SMDQSKPKTG  120
DQKALRRLAQ NREAARKSRL RKKAYVQQLE NSRLRLAQLE QELQRARQQG IFIATGVSGD  180
HGHSVAGNGR DSDIVERIFI YAMKANL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4421381e-32AM442138.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X255602.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046280.21e-89PREDICTED: transcription factor HBP-1b(c38) isoform X1
RefseqXP_017971464.11e-89PREDICTED: transcription factor HBP-1b(c38) isoform X2
SwissprotQ9SX272e-41PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A061ECH83e-88A0A061ECH8_THECC; BZIP transcription factor family protein isoform 1
STRINGEOY021125e-89(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.12e-27bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]