PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31964_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 151aa MW: 18288.6 Da PI: 6.7749

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31964_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	86	109	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H Neem_31964_f_1 86 WRCGYCKKSFRAEKFLDQHFDNrH 109 58**********999999976655 PP
2	zf-C2H2	13.3	0.00024	115	138	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H Neem_31964_f_1 115 WRCGYCKKSFRAEKFLDQHFDNrH 138 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.98E-5	80	133	No hit	No description
SMART	SM00355	0.88	86	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.88	115	138	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	117	138	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MIESIEFSGC SGILDWRNLK QELGEAHEIH CSRERSRAAW DIIEEYLMPF VDQEQYQISS 60 KCRLHPDNDM FRDQEKHKIH VDINEWRCGY CKKSFRAEKF LDQHFDNRHY TINEWRCGYC 120 KKSFRAEKFL DQHFDNRHYN LLNVVCGPLV P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476965.1	4e-57	uncharacterized protein LOC102619501
Refseq	XP_006476966.1	4e-57	uncharacterized protein LOC102619501
TrEMBL	A0A2H5PF63	8e-56	A0A2H5PF63_CITUN; Uncharacterized protein
STRING	XP_006476965.1	2e-56	(Citrus sinensis)
STRING	XP_006440031.1	1e-55	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4371	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	8e-45	C2H2-like zinc finger protein