PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31928_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 595aa    MW: 67188.8 Da    PI: 5.3364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31928_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.74.4e-932245933374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfs 94 
                     e Ll+ Ae v +++ e+a++lL++   l+s++g+p+qR++ yf+eAL++++ r++ ++ ++   ++++ +  +  ++a  +   f+e  P+ k+ 
  Neem_31928_f_3 224 EFLLASAEKVGNQQYERATRLLNQCDLLSSNKGNPVQRVVYYFAEALREKIDRETGRITSKELGKQQPFDIDVAMMSANPTslaFHEEIPFSKII 318
                     6799*************************************************6666655444444433333333333333558*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++  qaI+e v++++++HiiD++i +G+QW  L+qaLasR + p   l+iT+vg      ++ le tg+rL++fA+++++pf++n+++++++ +
  Neem_31928_f_3 319 QFAGIQAIVENVAKAKKIHIIDLGIRNGVQWTVLMQALASRYDCPIeLLKITAVGT---MAQHLLEDTGKRLTNFANSMNLPFSYNIVMVSDMLE 410
                     *****************************************96554499*******...56999******************************* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ + ++++ +E++aV  +l l ++l+ +  le+    +++++++++P v+vv+e ea+hns+ F++rf+e l y+sa fd+l++ + +++ +r+
  Neem_31928_f_3 411 LQEHLFSLDAKETIAVYAQLLLRSMLAFPDRLEN----IMRVIRNINPSVMVVTEIEANHNSPVFVNRFIEVLFYFSAYFDCLDTCMKPNDPHRM 501
                     *************************977777777....********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E +++++ i+n+va+eg+er+ rh +l  Wr+ + + G+ + +ls +   qa+ll++k++ +   ++  + +sl+ gWk+ p+ svS+W+
  Neem_31928_f_3 502 ITESMYFRQGIRNMVAAEGEERKTRHVKLDVWRAFFARYGMDETELSMSSLYQASLLVKKFAcGSSCTMALNGKSLIVGWKGTPVHSVSVWK 593
                     **************************************************************99999999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.991196572IPR005202Transcription factor GRAS
PfamPF035141.5E-90224593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MANAVFSLEG LKYGEVPDKL SSTENSFESV ERGIIGKQFN SYGVEDSGES GAIDSFCPDY  60
GFYQGVLSEQ GFLFSKYQQR EQSFSSYELP DNLRFDIPSP PIQTCLEDIA KHGEIPTGIQ  120
DVVEPKKEKQ FPFSLASLEL LKNYGSGFKR LKGERRIEPS NDMAFTKVES QKLSTEEIMK  180
IAGERFIHSS SHAVEDVVSM LSNPFDLSFS GLSTEEIRDV ELAEFLLASA EKVGNQQYER  240
ATRLLNQCDL LSSNKGNPVQ RVVYYFAEAL REKIDRETGR ITSKELGKQQ PFDIDVAMMS  300
ANPTSLAFHE EIPFSKIIQF AGIQAIVENV AKAKKIHIID LGIRNGVQWT VLMQALASRY  360
DCPIELLKIT AVGTMAQHLL EDTGKRLTNF ANSMNLPFSY NIVMVSDMLE LQEHLFSLDA  420
KETIAVYAQL LLRSMLAFPD RLENIMRVIR NINPSVMVVT EIEANHNSPV FVNRFIEVLF  480
YFSAYFDCLD TCMKPNDPHR MITESMYFRQ GIRNMVAAEG EERKTRHVKL DVWRAFFARY  540
GMDETELSMS SLYQASLLVK KFACGSSCTM ALNGKSLIVG WKGTPVHSVS VWKFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3925259333375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488851.10.0DELLA protein RGL1-like
TrEMBLA0A2H5N6800.0A0A2H5N680_CITUN; Uncharacterized protein
TrEMBLV4RFL40.0V4RFL4_9ROSI; Uncharacterized protein
STRINGXP_006488851.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157861014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-59RGA-like 1