PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31666_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 136aa MW: 15466.3 Da PI: 4.5581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31666_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.1	4e-15	58	123	2	73
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ Neem_31666_f_1 58 FYNCYAKEQGFGVRVSNTWYR-KSKEKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDQ 123 9*************99997.66779**********99888.....**************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-12	58	122	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MDEVSLNTEP VGDDDTDDFE VVGDCAMTEY VGQTGIAQNP LPPAVGMEFE TYEDVYYFYN 60 CYAKEQGFGV RVSNTWYRKS KEKYRGKLSC SSAGFKKKSE ANRPRPETRT GCPAMIKFRL 120 MDQTAQDQKQ ELVVQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036105.1	7e-84	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	4e-29	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S8ABT0	2e-79	A0A1S8ABT0_CITLI; FAR1-related sequence
TrEMBL	A0A2H5QM01	4e-82	A0A2H5QM01_CITUN; Uncharacterized protein
STRING	XP_006465297.1	1e-81	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	2e-31	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]