PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3096_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 482aa    MW: 53796.8 Da    PI: 4.8514
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3096_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-341392292101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+yei+ed++++ ++sws n +sf+v+d++ f++k+LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF++++F+ gkk+ll++i
  Neem_3096_f_1 139 FLRKIYEIVEDPDTDPVVSWSVNRSSFIVWDSHGFSEKLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANEKFQGGKKHLLKSI 225
                    9********************999*****************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    kr++
  Neem_3096_f_1 226 KRRN 229
                    **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-31135228IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-36135228IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-53135228IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-30139228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-18139162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-18177189IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340178202IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-18190202IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVMPHADSGG GGGGGGTSSS FSSNVFAKTN QDVGQAVATE VQNEILLKAH PQVAVKEEEQ  60
EQTATVNNNC YNSGAGPSSS SSSMRTLVRI KEEEKENPVD FDDDAENISV DNNGSPSSSS  120
SAALPKPMEG LHEVGPPPFL RKIYEIVEDP DTDPVVSWSV NRSSFIVWDS HGFSEKLLPK  180
YFKHKNFSSF IRQLNTYGFR KIDSDRWEFA NEKFQGGKKH LLKSIKRRNR FNKPQDGAVT  240
CFDSTPGVEV ELETLKNDQN TLRLEILKLR QQQEDSQSQM SVVKERIRCA ECKQQQMLNF  300
FGKIARYPNF VQQLIQKRKQ QRELDWGEFG KRRRLLATQD HESLPPPVDT SGNFNSRNQA  360
REQLASMQSE LTDMLPDGVD TDAVEKVPLQ GLISDDLCSP IEDLKGNLMC GGSAHDTSSV  420
YHEMVGNLFG DSSVMENVTD DEVAVNDTQI FHELEDLIGK PHNWAGYVNE LVEQARVVGS  480
IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2213722827129Heat shock factor protein 1
5d5v_B2e-2213722827129Heat shock factor protein 1
5d5v_D2e-2213722827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227LKSIKRR
2316333KRKQQRELDWGEFGKRRR
3330334KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033340.10.0heat shock factor protein HSF30
TrEMBLA0A067E3H80.0A0A067E3H8_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3360.0A0A2H5Q336_CITUN; Uncharacterized protein
STRINGXP_006475478.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-80heat shock transcription factor A9