PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30695_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 51aa MW: 5690.52 Da PI: 8.7766 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd++lv++++++G g+W++ ++ Neem_30695_a_1 14 KGPWTPEEDQKLVKYIQKHGHGSWRALPKLA 44 79***********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-15 | 5 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.585 | 9 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-10 | 11 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-11 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-7 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MGRSPCCDET GLKKGPWTPE EDQKLVKYIQ KHGHGSWRAL PKLADAGRVV D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004803.1 | 3e-26 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_024457048.1 | 2e-26 | transcription factor MYB93 isoform X2 | ||||
Swissprot | Q9S9Z2 | 3e-26 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3N7F5M4 | 4e-25 | A0A3N7F5M4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s07590.1 | 2e-25 | (Populus trichocarpa) | ||||
STRING | POPTR_0005s17080.1 | 2e-25 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-28 | myb domain protein 93 |
Publications ? help Back to Top | |||
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