PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_30614_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 398aa MW: 42454.6 Da PI: 8.4808

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30614_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	52	1.6e-16	2	35	22	55
G2-like 22 GGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 G ++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Neem_30614_f_1 2 GHKKKAVPKKILELMNVPGLTRENVASHLQKYRL 35 6689*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-16	2	40	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-14	2	35	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.53E-9	4	39	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGHKKKAVPK KILELMNVPG LTRENVASHL QKYRLYLRRL SGVSQHQSTT FISPQEPPYG 60 PLSSLNGLDI QALAATGQIP AQSLATLQAA GLGRSTAKPG LPMPLVDQRN LFSFDNQKIR 120 FGEAQPQHMN SGKQMNLLHG IPTTMEPKQL VNLHHSTQSL GGLNMPVSAH GGQSSQSNSL 180 LIQMTQPQAR GQILNENTVG QVPRLPTSMG QPILSNGVAS GILTRNGIGE SGRGTGYNSV 240 SQTSSMLNFP LNPPADLPGN SFPLRSLTFD ASQHSNTLQG NVDVAPSVLV NQGYSSSQRS 300 GQNSNASALG KAMFSVGEGS EHGNAQNVGQ HLNNLLVDNS MGVKAERVSD TSCPPTAFPQ 360 HFGQEDLMSA LLKQQQDGIG PAENEFEFDG YSLDNIPV

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGHKKKAVPK KILELMNVPG LTRENVASHL QKYRLYLRRL SGVSQHQSTT FISPQEPPYG  60
PLSSLNGLDI QALAATGQIP AQSLATLQAA GLGRSTAKPG LPMPLVDQRN LFSFDNQKIR  120
FGEAQPQHMN SGKQMNLLHG IPTTMEPKQL VNLHHSTQSL GGLNMPVSAH GGQSSQSNSL  180
LIQMTQPQAR GQILNENTVG QVPRLPTSMG QPILSNGVAS GILTRNGIGE SGRGTGYNSV  240
SQTSSMLNFP LNPPADLPGN SFPLRSLTFD ASQHSNTLQG NVDVAPSVLV NQGYSSSQRS  300
GQNSNASALG KAMFSVGEGS EHGNAQNVGQ HLNNLLVDNS MGVKAERVSD TSCPPTAFPQ  360
HFGQEDLMSA LLKQQQDGIG PAENEFEFDG YSLDNIPV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419443.1	0.0	two-component response regulator ARR2 isoform X1
Refseq	XP_024047521.1	0.0	two-component response regulator ARR2 isoform X3
TrEMBL	V4RFQ4	0.0	V4RFQ4_9ROSI; Two-component response regulator
STRING	XP_006419443.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2403	27	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	1e-73	response regulator 1