PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30599_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 115aa MW: 13074.8 Da PI: 7.9395 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.3 | 2.3e-13 | 36 | 110 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++yfF+k +kk+++g+r nr++ g W+ +e++s+ +++lvg k + + k+ + + W+mhey+ Neem_30599_f_1 36 GDEDLYFFTKLKKKTPKGSRINRKVGlgGGAWQGEDAPTEIVSNkTQKLVGSNKRFCYEKE--DSDDNGCWIMHEYT 110 67899******************86655999*****9999999756677********9854..444599*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.969 | 1 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-20 | 8 | 110 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-16 | 10 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MHETGPCIIV GHRFMPADAE LVEYYLYQKA GNLLKGDEDL YFFTKLKKKT PKGSRINRKV 60 GLGGGAWQGE DAPTEIVSNK TQKLVGSNKR FCYEKEDSDD NGCWIMHEYT GRCSY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024041996.1 | 3e-32 | NAC domain-containing protein 83 | ||||
TrEMBL | V4TL45 | 1e-32 | V4TL45_9ROSI; Uncharacterized protein | ||||
STRING | XP_006437301.1 | 2e-33 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13879 | 3 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 8e-13 | NAC family protein |