PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30360_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 35625.9 Da PI: 10.595 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.7 | 1.5e-10 | 233 | 252 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D+y+WrKYGqK++kgs++pr Neem_30360_f_2 233 DEYSWRKYGQKPIKGSPHPR 252 9******************9 PP | |||||||
2 | WRKY | 52 | 1.4e-16 | 266 | 306 | 20 | 59 |
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 f +YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Neem_30360_f_2 266 FNWGYYKCSSVrGCPARKHVERCPEDPSMLIVTYEGEHNHS 306 6678*****988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.0E-18 | 184 | 229 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 9.2E-30 | 219 | 307 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.593 | 226 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-21 | 229 | 306 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-35 | 231 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-20 | 233 | 305 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEEVEAANKA AVESCHRVLA LFSQHKDQVQ YRNLAVETGE AVFKFRKVVS LLSNRLGHGR 60 ARKLKKLKPP SSLPQNIFLD SPSFRPVLSP KPLQIIPANF HENPVQLTKN LFDDNQSQAK 120 IPSFKSPLQI APPGLPQNFQ FMHHQQQMQR LQLKLPVHAS PAADAKAAVS AATEQSSQIS 180 QHSRKRCFGR GEEGSVKCST SGKCHCSKRR KHRIKRTIKV PAISNKVADI PPDEYSWRKY 240 GQKPIKGSPH PRLVWAGLNY LYKASFNWGY YKCSSVRGCP ARKHVERCPE DPSMLIVTYE 300 GEHNHSRLQS SQSAHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-16 | 229 | 305 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894273.1 | 1e-130 | probable WRKY transcription factor 74 | ||||
Swissprot | Q9SR07 | 4e-93 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | A0A061F110 | 1e-119 | A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1 | ||||
STRING | evm.model.supercontig_1244.3 | 1e-129 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-66 | WRKY DNA-binding protein 39 |
Publications ? help Back to Top | |||
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