PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29939_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 398aa MW: 45143.2 Da PI: 8.473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29939_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	330	375	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+Y+k+Lq Neem_29939_f_1 330 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYVKELQ 375 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.939	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-15	327	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.23E-11	328	379	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-15	329	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-13	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	330	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MESDLQHQHH FLHDHQPQHH QKQLNSGLSR YQSAPSSYFS SFLDRDFCED FLNRPTSPET 60 ERIFARFLSN ASGNTENNVP DQNLGLIAEN SPVREKIMES EQQMMPQMND QSGIMQQQQQ 120 RNYSSAPKNY YQHQQQQNLQ NQSSEMDYRT MSSVGMDRFP PVKMSGSAGN NSNLIRHSRY 180 VVMKGMGDYG AGNNIKREAS FSTAGRPPTT PSKPMSPISE IGNKSNNAGF SETHSNNFSS 240 GFPIDSWDES SMMSENMGGV RRLREDDRTL SGLSAAETQN IDAGNRPPPL LAHHLSLPKD 300 MASFEKLLQF QDSVPCKIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL VPNMDKQTNT 360 ADMLDLAVDY VKELQKQVKA LSDNRAKCTC SREHQQRP

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MESDLQHQHH FLHDHQPQHH QKQLNSGLSR YQSAPSSYFS SFLDRDFCED FLNRPTSPET  60
ERIFARFLSN ASGNTENNVP DQNLGLIAEN SPVREKIMES EQQMMPQMND QSGIMQQQQQ  120
RNYSSAPKNY YQHQQQQNLQ NQSSEMDYRT MSSVGMDRFP PVKMSGSAGN NSNLIRHSRY  180
VVMKGMGDYG AGNNIKREAS FSTAGRPPTT PSKPMSPISE IGNKSNNAGF SETHSNNFSS  240
GFPIDSWDES SMMSENMGGV RRLREDDRTL SGLSAAETQN IDAGNRPPPL LAHHLSLPKD  300
MASFEKLLQF QDSVPCKIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL VPNMDKQTNT  360
ADMLDLAVDY VKELQKQVKA LSDNRAKCTC SREHQQRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007014950.2	1e-180	PREDICTED: transcription factor bHLH122 isoform X2
TrEMBL	A0A061GZ59	1e-178	A0A061GZ59_THECC; DNA binding protein, putative isoform 2
STRING	EOY32568	1e-179	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	5e-65	bHLH family protein