PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2988_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 305aa MW: 35389.1 Da PI: 9.7873

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2988_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	115	136	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lCr f+ tCkyGdrC++ H+ Neem_2988_f_3 115 LCRMFYYQKTCKYGDRCRYLHV 136 566555559************6 PP
2	zf-CCCH	28.4	2.8e-09	194	220	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++Cr++ tG C yG C FaHg+ Neem_2988_f_3 194 WKTKPCRNWDMTGSCLYGKICYFAHGQ 220 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.929	110	138	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.075	111	137	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	112	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-7	114	139	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	115	136	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-14	189	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-9	192	225	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.887	193	221	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-4	193	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-6	194	220	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSSSSWTPTC NFVSPPFQSG DKMLLLHHQY LIEKKERETF PHIEYPSTKR ARTGENFVHN 60 RRMLMNEVMS SNFQTKLGHY TYGDQCLFTH GAKNNHEQST GTWNGEDRLF DEVQLCRMFY 120 YQKTCKYGDR CRYLHVNPER VKEVISQFKD RPMVSSYKTG GSSGSKRSRS GRWEQKGFVK 180 SRSFCDQVNQ KPMWKTKPCR NWDMTGSCLY GKICYFAHGQ AELRHIGSHN ALEPRIVPEN 240 TSNIVSTIND QTRTTTKQQL HGMKSIFKGK ELKKISGIYA DWVDNTGRAP SDLLLLHTYP 300 NKVEN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29903	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-19	C3H family protein