PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2986_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 262aa    MW: 30145.2 Da    PI: 9.9554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2986_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.85.5e-1610108394
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                    +G rF P deelv +yL +kv g ++++ e  +ke+d+y  eP  + +    ++  ++++ yf +k +kk+ +g+r nr++    g W+      e
  Neem_2986_a_1  10 VGHRFMPXDEELVXYYLYRKVXGIPIPFVEYfVKECDLYGDEPGXIWNsyggNLLXGDEDXYFXTKLKKKTXKGSRINRKVGldGGAWQGEDAPSE 105
                    79***********************9998877**************743455444588999******************865559****9999988 PP

            NAM  92 vls 94 
                    ++s
  Neem_2986_a_1 106 IFS 108
                    887 PP
2NAM40.77.6e-1312119357128
            NAM  57 ewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      yfF+k +kk+++g+r nr++    g W+     +e++s+ +++l+g kk + + k  + +  +  W+mhey+l
  Neem_2986_a_1 121 XXYFFTKLKKKTPKGSRINRKVGldGGAWQGEDAPTEIVSSkTQKLIGSKKRFRYEK--EGSDDNGCWIMHEYTL 193
                    56******************865559*****999999998756777********984..44445789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.0788214IPR003441NAC domain
SuperFamilySSF1019412.09E-168108IPR003441NAC domain
PfamPF023654.4E-1610193IPR003441NAC domain
SuperFamilySSF1019411.15E-15121213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MHETGPCIIV GHRFMPXDEE LVXYYLYRKV XGIPIPFVEY FVKECDLYGD EPGXIWNSYG  60
GNLLXGDEDX YFXTKLKKKT XKGSRINRKV GLDGGAWQGE DAPSEIFSXX XXXXXXXXXX  120
XXYFFTKLKK KTPKGSRINR KVGLDGGAWQ GEDAPTEIVS SKTQKLIGSK KRFRYEKEGS  180
DDNGCWIMHE YTLHXSLLXK NQSMNCVLCR IRKNQPTWKK NQXTGKNNKS GKSKKRKLED  240
FQKSTQSVEA EPERKKQVAT LT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.18e-10NAC domain containing protein 45