PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2976_f_11

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 303aa MW: 33610.2 Da PI: 7.9193

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2976_f_11	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	108	208	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf a+q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg+i +lqqq+ +l+ael Neem_2976_f_11 108 PCGACKFLRRKCVKGCVFAPYFDADQgTAHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVGHIVALQQQVVNLQAEL 202 7***********************89***************************************************************** PP DUF260 95 allkee 100 a+++++ Neem_2976_f_11 203 AYTQAR 208 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.131	107	209	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-38	108	206	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MWRYSTVMTT NLSNNKSETG FLPFRQWNWN WLWDPMSKTV AVFSGHRYSE KRADMEVTGE 60 RNDLIRCIGC IYLCRTWDSH VAAAAAVGSL YCHSPHGDQM NANNGGGPCG ACKFLRRKCV 120 KGCVFAPYFD ADQGTAHFAA VHKVFGASNA SKLLMRIPVH KRLDAVVTLC YEALARARDP 180 VYGCVGHIVA LQQQVVNLQA ELAYTQARLA ILQRLPLPSQ AQSNSPPNLQ SSAELASATE 240 MLSSYNISMH FDPVQPQQLT PADLTSSFNP FDEEVDDGDL RTLAREFVSK YLPGVKIRPS 300 SSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	104	202	7	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	104	202	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445238.2	1e-111	LOB domain-containing protein 19 isoform X1
Refseq	XP_006490937.1	1e-111	LOB domain-containing protein 19
Swissprot	O81322	1e-71	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A2H5NPB4	1e-109	A0A2H5NPB4_CITUN; Uncharacterized protein
TrEMBL	V4TDR1	1e-109	V4TDR1_9ROSI; Uncharacterized protein
STRING	XP_006490937.1	1e-110	(Citrus sinensis)
STRING	XP_006445238.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	6e-58	LOB domain-containing protein 19