PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29679_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 145aa    MW: 15920.2 Da    PI: 11.7332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29679_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-1070114554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Neem_29679_a_1  70 HSIAERLRRERIAERMRALQELVPSC-----NKTDRAAMLDEIVDYVKFL 114
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1663125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.42565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1666127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.69E-1169119No hitNo description
PfamPF000106.8E-870114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPSLFPAFGQ LPTQSVRPSP PRPLQVQQQP LQSQPGAGGA XXXXXXXXXP QPPAVRPRVR  60
ARRGQATDPH SIAERLRRER IAERMRALQE LVPSCNKTDR AAMLDEIVDY VKFLRLQVKV  120
LSMSRLGAAG AVAQLVADVP LSSAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907184.14e-65transcription factor UNE12-like
SwissprotQ9ZUG97e-42BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1S3BPW12e-62A0A1S3BPW1_CUCME; transcription factor UNE12-like isoform X2
TrEMBLA0A314YM144e-62A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGXP_004171988.11e-62(Cucumis sativus)
STRINGcassava4.1_011595m1e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-23bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]