PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2946_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 607aa    MW: 67317.7 Da    PI: 6.306
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2946_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3611.7e-1102315381317
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                    lv+lLl+cAeav+++d  la+++L +l+  +sp gd+mqR+a++fteAL+arla + ++  ++ +p++ s+    s e l++++++++++P++kf+
  Neem_2946_f_2 231 LVHLLLACAEAVAKEDYMLARKYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPKSFSPFPpnSLEILKIYQILYQACPYVKFA 326
                    68****************************************************944443333333333322244********************* PP

           GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++ledl+
  Neem_2946_f_2 327 HFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SIESVKETGRCLTELAHSLHVPFEFHP-VGEQLEDLK 417
                    *******************************************************....9**************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +++++ + gEalaVn v +l+ ++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE
  Neem_2946_f_2 418 PHMFNRRVGEALAVNAVNRLYGVP--GNCLG----NLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVE 507
                    ***********************9..44444....5************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWre 317
                    + ++++ei+n+vaceg er  rhe+lekWr+
  Neem_2946_f_2 508 QYIFAPEIRNIVACEGPERMVRHERLEKWRM 538
                    *****************************96 PP
2GRAS73.24.8e-23537606305374
           GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    r  rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Neem_2946_f_2 537 RMVRHERLEKWRKIMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 606
                    5679*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045205586IPR005202Transcription factor GRAS
PfamPF035145.9E-108231538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MINSLCGSMG PIKSENSSNK LQPTSPNESI SEAKRTAPSS DLEQNGLTPQ SLNFPPLKFE  60
LDGDVEVQSP DSSIWESFFS DHLDGDFMIS SPVRNLPSPQ TSAYNYNYNY AQAMQGQSLS  120
GCSPPRFAAQ FGAVSSSLRA KGQSPLHKVF NSPHNQYMQP TESLALPAIE DFLDDYQKDG  180
YGMFSPMKIC GNASSLQLLD MPSTVPAMLE CLAMPNSPRF CGSEQDSGLQ LVHLLLACAE  240
AVAKEDYMLA RKYLHHLNRV VSPLGDSMQR VASCFTEALS ARLAATLTTK PSTSTPKSFS  300
PFPPNSLEIL KIYQILYQAC PYVKFAHFTA NQAIFEAFEA EERVHVIDLD ILQGYQWPAF  360
MQALAARPGG APFLRITGVG PSIESVKETG RCLTELAHSL HVPFEFHPVG EQLEDLKPHM  420
FNRRVGEALA VNAVNRLYGV PGNCLGNLLG MIRDQAPNIV TLVEQEASHN GPYFLGRFLE  480
ALHYYSAIFD SLDATFPPDS AQRAKVEQYI FAPEIRNIVA CEGPERMVRH ERLEKWRMVR  540
HERLEKWRKI MEGKGFKGVP LSANAVTQSK ILLGLYSCDG YRLTEDKGCL LLGWQDRAIL  600
AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-10023860525377Protein SCARECROW
5b3h_D1e-10023860525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084056.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2P5WGR60.0A0A2P5WGR6_GOSBA; Uncharacterized protein
STRINGGorai.006G044300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-92RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]