PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29403_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 25542.8 Da PI: 9.5037 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.1 | 1.2e-32 | 15 | 108 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++r+kC+++C la+yfp++++++f++vhk+FG+sn++k++ ++++ee r+++++sl++e+ +r++dP++G++g ++k+ ql+ ++ Neem_29403_f_1 15 ACAACKHQRKKCSEECKLARYFPSDRNREFQAVHKVFGVSNLTKIIYSVNDEEnRRKVVDSLIWESSCRQKDPISGSYGEYKKVLDQLKLCTNQ 108 7************************************************77666*****************************99988766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.875 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-31 | 15 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MHKNNHKSGT SVQSACAACK HQRKKCSEEC KLARYFPSDR NREFQAVHKV FGVSNLTKII 60 YSVNDEENRR KVVDSLIWES SCRQKDPISG SYGEYKKVLD QLKLCTNQTP MQCQNQNQNQ 120 NQLVQLPHAG IIYRSSSFTT GWNNGGNGLN MDGIINNNAL NYDNGNSIIE MDNYGYAPHN 180 FVPSPKNLKQ GREVNLIEEV ACSRKELIKV HGKYKMWKKL NQGGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 14 | 93 | 10 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 14 | 93 | 10 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024950727.1 | 5e-74 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A067DW22 | 7e-73 | A0A067DW22_CITSI; Uncharacterized protein | ||||
STRING | XP_006469134.1 | 2e-73 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 7e-36 | LOB domain-containing protein 2 |