PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29032_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 209aa MW: 23828.9 Da PI: 10.1618

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29032_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	43.3	1.2e-13	64	97	94	128
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg+kktLvfy g+ p+g++tdW+mheyrl Neem_29032_f_1 64 R-GNQIVGMKKTLVFYGGKPPHGSRTDWIMHEYRL 97 2.7888***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.922	1	129	IPR003441	NAC domain
Pfam	PF02365	1.5E-7	55	97	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-18	61	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGFCFKVIWS KRGTFSAQGR QSTQMGTDRT GLQVLVIGRR LDWTSKSHKG GKVPKWEQIE 60 QGYRGNQIVG MKKTLVFYGG KPPHGSRTDW IMHEYRLVSA ETAAPQKKNL IQSPVVPMDN 120 WVLCRIFLKK RGSKNEDEET CNENGIIRKQ RNNKPVFYDF LTKDRTDLNL APTSSSSGSS 180 GITEVSSNES EDHEESSCNS FPYFRRKQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-11	67	130	110	169	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881782.1	3e-76	NAC domain-containing protein 83-like
Refseq	XP_015902286.1	3e-76	NAC domain-containing protein 83-like
Swissprot	Q9FY93	6e-32	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0M4FP12	7e-70	A0A0M4FP12_MANES; NAC transcription factors 34
STRING	cassava4.1_014491m	1e-70	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-29	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]