PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28516_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 122aa    MW: 13408.5 Da    PI: 9.2894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28516_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-111449136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     +g+WT+eEd++l+ +++q+G g+W++ +++  ++++
   Neem_28516_a_1 14 KGPWTAEEDQKLLAYIEQHGHGSWRALPAKAELTLS 49
                     79************************9999886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-13543IPR009057Homeodomain-like
PROSITE profilePS5129410.551964IPR017930Myb domain
SuperFamilySSF466893.66E-91144IPR009057Homeodomain-like
SMARTSM007170.00321362IPR001005SANT/Myb domain
PfamPF002491.2E-81444IPR001005SANT/Myb domain
CDDcd001673.00E-61643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGRSPCCEKA GLKKGPWTAE EDQKLLAYIE QHGHGSWRAL PAKAELTLSL SVTPCWYKKR  60
LTKMGIDPVT HKPKTNALGS AVGQSKDAAN LSHMAQWESA RLEAEARLPP LPCRLEPSAL  120
TY
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019432443.12e-37PREDICTED: transcription factor MYB34-like isoform X2
SwissprotQ9LE633e-22MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0B0NT883e-49A0A0B0NT88_GOSAR; Myb-related Myb4
TrEMBLA0A0D2W4758e-49A0A0D2W475_GOSRA; Uncharacterized protein
TrEMBLB9T6W72e-48B9T6W7_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002533986.13e-49(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-23myb domain protein 16