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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Neem_28455_f_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family |
GRAS |
| Protein Properties |
Length: 303aa MW: 33625.7 Da PI: 9.5767 |
| Description |
GRAS family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 264.1 | 4.6e-81 | 4 | 291 | 18 | 312 |
GRAS 18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
e+a + L+ l+e++s++g+p++R+a +f eAL +r ++ ++y +p e++ ++ + +++++++++P+ kf++ltaNqaIlea+e+++ +
Neem_28455_f_1 4 ERAVKSLNSLKETVSQTGNPTERVAYHFIEALLNRATSGAGKIY---TPLEAN---CEDCILSYRALNDACPYSKFAYLTANQAILEATEKASFI 92
688999*******************************9444444...566665...899************************************ PP
GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
Hi+Df+i qG+QW LlqaLa+R+ g+p ++Ri g+ +++ g s+ +l +tg+rL++fA++l +++ef++ + + +++l+ ++r+ p+Ea++V
Neem_28455_f_1 93 HIVDFGIVQGIQWSFLLQALANRRTGKPvRVRISGIPPQALGkcSSVSLLATGKRLREFARSLSINLEFEP-ILTPIKKLTATSFRMGPDEAVVV 186
*********************99977666*********8877999**************************.799******************** PP
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
n++lql++lld++ + + +vL++ +sl+P+vv++ e e+++n+ F++rf +a++yy+a+f+slea++ ++s++r vEr++lgr+i+ ++
Neem_28455_f_1 187 NFMLQLYNLLDDNPVSLQ---AVLEVARSLKPTVVTLGEYETSLNRVGFVTRFKNAFKYYTAVFESLEANM-TDSSARLYVERHILGRRISGLLG 277
**********77655555...8************************************************6.999******************** PP
GRAS 300 cegae.rrerhetl 312
e++ +rer e++
Neem_28455_f_1 278 PEKSGsKRERAESA 291
99987567887765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
SQPERAVKSL NSLKETVSQT GNPTERVAYH FIEALLNRAT SGAGKIYTPL EANCEDCILS 60
YRALNDACPY SKFAYLTANQ AILEATEKAS FIHIVDFGIV QGIQWSFLLQ ALANRRTGKP 120
VRVRISGIPP QALGKCSSVS LLATGKRLRE FARSLSINLE FEPILTPIKK LTATSFRMGP 180
DEAVVVNFML QLYNLLDDNP VSLQAVLEVA RSLKPTVVTL GEYETSLNRV GFVTRFKNAF 240
KYYTAVFESL EANMTDSSAR LYVERHILGR RISGLLGPEK SGSKRERAES AYSPHFFLAL 300
MGF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
