PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28308_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 215aa MW: 23219.9 Da PI: 7.0707 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.2 | 1.2e-12 | 76 | 102 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Neem_28308_f_1 76 PGQPECQFYMKTGDCKFGAVCRFHHPR 102 5789*********************96 PP | |||||||
2 | zf-CCCH | 41.4 | 2.3e-13 | 122 | 148 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Neem_28308_f_1 122 PGEPLCIFYSRYGICKFGPSCKFDHPM 148 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-6 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 77 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 81 | 103 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 124 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLQHILGMPF FQGQLGSVSS SESLQQTAGN NQIYGASHQS EPTNSGSQGT NSPYHSGSVP 60 AGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCRFHH PRERLIPVPD CVLSPIGLPL 120 RPGEPLCIFY SRYGICKFGP SCKFDHPMGI FTYNLSTSSS ADTPVRRFLG SSSGTGALNL 180 SSEGLVEAGS GKPRRLSLSE TRQMSSGDDN IDTEG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955988.1 | 1e-129 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_024955989.1 | 1e-129 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_024955990.1 | 1e-129 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_024955991.1 | 1e-129 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 1e-109 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A067DXP3 | 1e-129 | A0A067DXP3_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4SMD3 | 1e-127 | V4SMD3_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4UQN0 | 1e-127 | V4UQN0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480413.1 | 1e-128 | (Citrus sinensis) | ||||
STRING | XP_006428579.1 | 1e-128 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-68 | zinc finger protein 1 |