PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2827_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 272aa MW: 30725.3 Da PI: 4.5421

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2827_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	7e-14	121	179	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f g+r++ k++ +k+ r+ra tr+gCka++ v+k++++kw vtk+++eH+H la Neem_2827_f_2 121 QEFESVSAGYRKPPKHE-VKNIRPRAPTRVGCKAMISVRKMSSEKWIVTKFVKEHTHVLA 179 67888889999999999.9**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-11	121	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEVVIQNFHF TVKSEHGIDT QLEQKDYDSH DEMSDDRNDG DEQLEDSECC SSIQLEQCFN 60 DTSEEMVYDS TDNTLQQGND GTTIGSSVEM VSQVEKNDKM TQSSSGVQLT IVDGDEPYVG 120 QEFESVSAGY RKPPKHEVKN IRPRAPTRVG CKAMISVRKM SSEKWIVTKF VKEHTHVLAG 180 SSQPPKTVLY NQIATEDRRV QELTQQLLIE RKRSASLRRC LDLLLNHIEE HTQDLSKKIQ 240 CLAVMQGVCT FDKLEDEDYS LIPLAASEML GG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976236.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017976237.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017976238.1	2e-83	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H5QP34	2e-99	A0A2H5QP34_CITUN; Uncharacterized protein
STRING	XP_006428702.1	3e-91	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22968	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-35	FAR1 family protein