PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28263_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 155aa MW: 18207.6 Da PI: 8.3929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28263_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.5	1e-43	6	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppGfrF Pt+eelv++yL++k+eg++ + + +i+ v+iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWka Neem_28263_f_1 6 PPGFRFYPTEEELVSFYLHNKLEGRRqdlN---RlmdrIIPVVNIYDYNPWDLPQfseyLCHRDPEQWFFFIPRQENEARGGRPNRLTTAGYWKA 97 9***********************5552...3333379*********9646653344667************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s +++vg k+t+vfy+grap+g kt+W m+ey+ Neem_28263_f_1 98 TGSPGFVYS-LNRAVGQKRTMVFYRGRAPNGAKTEWKMNEYK 138 *****.8899*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-46	3	144	IPR003441	NAC domain
PROSITE profile	PS51005	44.839	5	155	IPR003441	NAC domain
Pfam	PF02365	4.2E-23	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVEEYPPGFR FYPTEEELVS FYLHNKLEGR RQDLNRLMDR IIPVVNIYDY NPWDLPQFSE 60 YLCHRDPEQW FFFIPRQENE ARGGRPNRLT TAGYWKATGS PGFVYSLNRA VGQKRTMVFY 120 RGRAPNGAKT EWKMNEYKAI EGEASTHSTA AVPMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-33	6	149	18	152	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-33	6	149	18	152	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-33	6	149	18	152	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-33	6	149	18	152	NO APICAL MERISTEM PROTEIN
3swm_A	8e-33	6	149	21	155	NAC domain-containing protein 19
3swm_B	8e-33	6	149	21	155	NAC domain-containing protein 19
3swm_C	8e-33	6	149	21	155	NAC domain-containing protein 19
3swm_D	8e-33	6	149	21	155	NAC domain-containing protein 19
3swp_A	8e-33	6	149	21	155	NAC domain-containing protein 19
3swp_B	8e-33	6	149	21	155	NAC domain-containing protein 19
3swp_C	8e-33	6	149	21	155	NAC domain-containing protein 19
3swp_D	8e-33	6	149	21	155	NAC domain-containing protein 19
3ulx_A	8e-33	6	138	16	139	Stress-induced transcription factor NAC1
4dul_A	8e-33	6	149	18	152	NAC domain-containing protein 19
4dul_B	8e-33	6	149	18	152	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481732.1	3e-90	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-57	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H5MYF9	8e-89	A0A2H5MYF9_CITUN; Uncharacterized protein
STRING	XP_006481732.1	1e-89	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-60	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]