PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28167_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 341aa    MW: 38788.9 Da    PI: 9.0798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28167_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12203228126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  Neem_28167_f_2 203 YQPDICKDYKETGYCGYGDSCKFMHD 228
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9200233IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7202229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878202230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12203233IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10203228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-13267321IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-8279321No hitNo description
SuperFamilySSF578501.47E-12279322No hitNo description
CDDcd001621.76E-7280321No hitNo description
SMARTSM001845.8E-4280317IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.35280318IPR001841Zinc finger, RING-type
PROSITE patternPS005180295304IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNQINSGKEK EKLKVGSLRR NALKVSSGTF PKPRFSRTLG WYLAEAFEAS SAISLESQPG  60
IRTLGKELLM KMKMRIQLKA RCYRTKGRPQ SLTSNSNSEP IFQFESSKEI QVQHDNRATA  120
TLETETEFSR DSRALREKVL KRSEEALKGK SSVDEKLYKG MHGYVDHKAG FRREHTVSSE  180
KAGGAHGPLR ASAHIRVTAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK  240
EWEEAEKARK RNLALGGGDP DEEGGDQSDE DDDDSLPFAC FICRKPFVDP VVTKCKHYFC  300
EHCALKHHAK NKKCFVCNQP TLGIFNAAHE IRKKMAEEDR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-62115335113317RING finger protein 113A
5z58_M2e-62115335113317RING finger protein 113A
6ff4_t2e-62115335113317RING finger protein 113A
6ff7_t2e-62115335113317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439792.11e-161zinc finger CCCH domain-containing protein 1
RefseqXP_006476759.11e-161zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-141C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG61e-140C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A067G2P31e-160A0A067G2P3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NFD51e-160A0A2H5NFD5_CITUN; Uncharacterized protein
TrEMBLV4TI411e-160V4TI41_9ROSI; Uncharacterized protein
STRINGXP_006476759.11e-160(Citrus sinensis)
STRINGXP_006439792.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1534122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-131C3H family protein