PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27974_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 482aa    MW: 54302.5 Da    PI: 6.3677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27974_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13306351454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Neem_27974_f_1 306 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKEL 351
                     799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4925206IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-18300368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.75E-15305355No hitNo description
Gene3DG3DSA:4.10.280.102.2E-17306368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-11306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEIVSSSSS SYPIPFSHET SPTLLQRLQF IVQNRPEWWV YSIFWQPSKD VNGRLVLSWG  60
EGYFRGNKDF AARAANKQGH EPKFGFFLER KKGSKDVQVP FGEDMDLDRM VDGDVTDYEW  120
YYTVSVTRSF AIGDGVLGRV FSSGDFVWLT GDHELQLYEC ERVKEARMHG IQTLVCLATP  180
CGVVELGSSD MIKEDWNLVQ LAKTIFGPDI ASLLSKQANS ETQVQGPGRN VPLLDIGMFP  240
GPQKEWTLEE KPRDGDIKKE IPVLGRSSSD SGPSDSDGNF VSGYTDNVTS KKRGRKPTTG  300
RESPLNHVEA ERQRRERLNH RFYALRSVVP NVSKMDKASL LADAVAYIKE LKAKIDQLET  360
KLQEQSRKSK VYGMNIYDSQ STTSTYDRIL MRPTAASSHC VSAMDVDVKI VGSEAMIRVQ  420
CPDINYPAAK LMDALRDLEF QVHHASVSSV RELMLQDVVV RVPEGLISEE VIRTAIFQKM  480
QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-29232068192Transcription factor MYC3
4rqw_B6e-29232068192Transcription factor MYC3
4rs9_A6e-29232068192Transcription factor MYC3
4yz6_A6e-29232068192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045664.10.0transcription factor MYC2
TrEMBLA0A067GDM60.0A0A067GDM6_CITSI; Uncharacterized protein
STRINGXP_006439218.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-66bHLH family protein