PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2732_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 243aa    MW: 25082.1 Da    PI: 7.5086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2732_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-0940801055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   r RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Neem_2732_f_1 40 RLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 80
                   88******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.8023079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-143990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-84085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-114084No hitNo description
PfamPF000108.5E-74080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-134089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQTPNFGASG PVMNQTPQPQ ASGSNGGATG GNTPAQPKQR LRRERIAERM KALQELVPNA  60
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADMSSEGGD CVQANGNGRN  120
PNGSQTASTN DSLTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN  180
PMISNNNHVN NGNAAAHGTN PLLQANGEGP SSPSMSVLTV QSATIGNGGT DGPVKDAASV  240
SKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473971.11e-122transcription factor bHLH66
SwissprotQ9ZUG96e-76BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A067EW811e-120A0A067EW81_CITSI; Uncharacterized protein
STRINGXP_006473971.11e-121(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-73LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]