PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26784_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 506aa    MW: 57440.4 Da    PI: 6.292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26784_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17141231199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k++++s+v+   +l lp +f++ h+   + ++  ++e+e+g+++++++     s+r+ l++GWk F+++n+L egD++vF+l++ ++f  +v 
  Neem_26784_f_2 141 FWKAMVKSNVSHGFWLHLPMRFCKLHMP--KIDTVFIVENETGEEYKINY----ISQRTALSGGWKAFCDSNQLFEGDVLVFHLIEPTKF--KVY 227
                     6799*******************99973..477899**************....566778************************987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Neem_26784_f_2 228 IVRA 231
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-20137232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-23138233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-23139230No hitNo description
PROSITE profilePS5086313.366141232IPR003340B3 DNA binding domain
PfamPF023621.1E-15141231IPR003340B3 DNA binding domain
SMARTSM010192.4E-22141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSIVIWLLLP FLRLLQANTT DAAKARLCFA ISEKILAFGH VEVHVIICQS SMPKTKKPDK  60
TGKIKRRKTA DSKMKLTQIL DKSPDPDYGT ELVGYDSSKE SRSRRKRAMI DDLYDQAKVN  120
SPVIERAEEV RANLAASCPS FWKAMVKSNV SHGFWLHLPM RFCKLHMPKI DTVFIVENET  180
GEEYKINYIS QRTALSGGWK AFCDSNQLFE GDVLVFHLIE PTKFKVYIVR ANGFLNAEAK  240
PLNSVPLDVE LDVATGDQTE EDRKNYKRAK HARPPPGFTQ DNTQSNSLMV LGSGNGHIED  300
QFDNDSEDLA SDTLKAMQLS ESTDNFKEVK SIDDFTILVD GLAIDSELSD HHRTKYYKLC  360
SSQNFFLHNH LLKSINCKLA AEIITQTVNI AEAIRACNLS TSQADYEIWD KTLKGFELLG  420
MNVGFLRARL NRLMSLAFNS EESEESKRLQ EVSLEQARAE EEIRTLELKL LTLKETVERL  480
DSEAESLRAK AEKHELIFHE EVTAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15567KKPDKTGKIKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423044.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLV4UAJ30.0V4UAJ3_9ROSI; Uncharacterized protein
STRINGXP_006423044.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-33B3 family protein