PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2595_f_6

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 578aa MW: 67369.6 Da PI: 6.4005

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2595_f_6	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.5	2.6e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel Neem_2595_f_6 71 EYYSKFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-22	71	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.101	451	487	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-7	459	484	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	462	489	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAMKPSTNIW IRRQQCPCGD WKCYIKYEGD DQTSFSSQQI KTETTTSLSS SEAVFTPYVG 60 QIFKSDDEAF EYYSKFARKN GFSIRKARST ESQNLGVYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDMLELLE ACKNMTERDV DFVFEYTMDD NDKVENIAWS YGDSVRAYTL FGDVVTFDTT 300 YRSITYGLLL GVWFDKHIAL LFSCRASWPY SYIRGDFLAR TMTVEFSQSL DTFFKKILSE 360 QTCLQVFFEQ FYLQSLKVGV SANFRNLTRE GMQYMHIKTC MPMEEHARSI LTPYAFRVLQ 420 HEIVLSTQYA ITEMTNGSYL LRHYKKMDVE YLVIWIPEDE QIHCSCKEFE HSGILCRHSL 480 RVLVVKNYFQ LPEKYLLLRW RLESSLVPVE DQNAESSSDD CAQAFHSLAA ALLTESLISK 540 ERFNYVHREI TGLLDHVRNM PDTDEFALNM AANNVSES

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAMKPSTNIW IRRQQCPCGD WKCYIKYEGD DQTSFSSQQI KTETTTSLSS SEAVFTPYVG  60
QIFKSDDEAF EYYSKFARKN GFSIRKARST ESQNLGVYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDMLELLE ACKNMTERDV DFVFEYTMDD NDKVENIAWS YGDSVRAYTL FGDVVTFDTT  300
YRSITYGLLL GVWFDKHIAL LFSCRASWPY SYIRGDFLAR TMTVEFSQSL DTFFKKILSE  360
QTCLQVFFEQ FYLQSLKVGV SANFRNLTRE GMQYMHIKTC MPMEEHARSI LTPYAFRVLQ  420
HEIVLSTQYA ITEMTNGSYL LRHYKKMDVE YLVIWIPEDE QIHCSCKEFE HSGILCRHSL  480
RVLVVKNYFQ LPEKYLLLRW RLESSLVPVE DQNAESSSDD CAQAFHSLAA ALLTESLISK  540
ERFNYVHREI TGLLDHVRNM PDTDEFALNM AANNVSES

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028943522.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A438IEF7	0.0	A0A438IEF7_VITVI; Uncharacterized protein
STRING	POPTR_0016s00900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]