PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25757_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 65aa MW: 7597 Da PI: 10.258

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25757_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	14	35	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C++ F + L++H++ H Neem_25757_f_1 14 CYYCDREFDDEKILVQHQKAkH 35 99****************9888 PP
2	zf-C2H2	13.6	0.0002	36	59	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ + H H Neem_25757_f_1 36 FKCHVCHKKLSTAGGMAIHVLQvH 59 89***********99999987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.692	7	65	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	4.9E-6	11	61	No hit	No description
SMART	SM00355	20	12	35	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	14	35	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.065	36	59	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	38	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGKKKKRVSS KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTAGG MAIHVLQVHK 60 EAVTK

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041015.1	6e-43	PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_011035503.1	6e-43	PREDICTED: protein SUPPRESSOR OF FRI 4-like isoform X4
Refseq	XP_011035504.1	6e-43	PREDICTED: protein SUPPRESSOR OF FRI 4-like isoform X5
Refseq	XP_021300281.1	6e-43	protein SUPPRESSOR OF FRI 4
Refseq	XP_021607215.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X1
Refseq	XP_021607216.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_021655872.1	4e-43	protein SUPPRESSOR OF FRI 4-like isoform X2
Refseq	XP_022725418.1	7e-43	protein SUPPRESSOR OF FRI 4-like isoform X4
Refseq	XP_022725419.1	6e-43	protein SUPPRESSOR OF FRI 4-like isoform X5
Refseq	XP_022725420.1	5e-43	protein SUPPRESSOR OF FRI 4-like isoform X6
Refseq	XP_022725421.1	5e-43	protein SUPPRESSOR OF FRI 4-like isoform X7
Refseq	XP_022762592.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X1
Refseq	XP_022762593.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_022762594.1	5e-43	protein SUPPRESSOR OF FRI 4 isoform X3
Refseq	XP_024020147.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X1
Refseq	XP_024020148.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_024020149.1	5e-43	protein SUPPRESSOR OF FRI 4 isoform X3
Refseq	XP_024020150.1	5e-43	protein SUPPRESSOR OF FRI 4 isoform X4
Refseq	XP_024444354.1	6e-43	protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_027340592.1	5e-43	protein SUPPRESSOR OF FRI 4 isoform X3
Swissprot	Q9C5G0	3e-40	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A061DWR6	1e-41	A0A061DWR6_THECC; Zinc finger family protein isoform 3 (Fragment)
STRING	EOX96845	4e-42	(Theobroma cacao)
STRING	POPTR_0001s16080.1	2e-42	(Populus trichocarpa)
STRING	GLYMA05G34280.1	3e-42	(Glycine max)
STRING	GLYMA08G05390.1	5e-42	(Glycine max)
STRING	XP_002528158.1	2e-42	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7695	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	1e-42	C2H2 family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]