PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25663_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WOX
Protein Properties Length: 376aa    MW: 42506.1 Da    PI: 7.2679
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25663_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox695.7e-2281140357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Neem_25663_f_1  81 SRWNPTPEQLRTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 140
                     7*****************99**************************************97 PP
2Wus_type_Homeobox115.32.9e-3780142365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     Neem_25663_f_1  80 SSRWNPTPEQLRTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 142
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-578145IPR001356Homeobox domain
PfamPF000461.1E-1981140IPR001356Homeobox domain
SuperFamilySSF466892.82E-1281146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-981140IPR009057Homeodomain-like
CDDcd000864.48E-782142No hitNo description
PROSITE profilePS5007111.20886141IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MWMMGYNDNG DFNMPDSCNG RKLRPLIPRL VPSGNNTSTA TPPCLSRIHG TDFFGLNHHL  60
GSHFGDQNKR EFNTPPVVVS SRWNPTPEQL RTLEELYRRG TRTPSAEQIQ HITAQLRRYG  120
KIEGKNVFYW FQNHKARERQ KRRRQLESAA DHHHEHNNHD IEIFERNTKD PVASKTGYEV  180
EQTKNWAAPT DCSTLAEESV SLQRSAKAAM AECRQHGGWI QFDEAGELQH RSSRSLVERN  240
ATWQMMQLSC PSPPTHLINT HSINSNTTKA TPDHQSAAAF RAMDQKQLIK ATHDLNFFFS  300
PYRENCNGFN YLNTSVGAED SGCGEESDQT LQLFPLRSGD GGTGNNSDKG TDVSIAAAMD  360
ANLTPCQFFE FLPLKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036796.21e-164PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A061FWQ31e-165A0A061FWQ3_THECC; WUSCHEL, putative isoform 1
STRINGEOY212981e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-65WUSCHEL related homeobox 1