PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2555_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

VOZ

Protein Properties

Length: 482aa MW: 54324.4 Da PI: 7.0539

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2555_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	411.1	2.1e-126	213	429	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 pppsaf+gpkcalwdctrpa g+ew++dycssfhatla++e++pg++pvlrp+gi+lkd+llf+a++ak+qgk+vgip+cegaat+k+pwna+e+f Neem_2555_f_1 213 PPPSAFMGPKCALWDCTRPALGFEWYKDYCSSFHATLAVHEDSPGISPVLRPGGINLKDSLLFNAVNAKAQGKNVGIPHCEGAATTKCPWNATEIF 308 89******************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvde 192 d+sll+getirewlffdk rrafesg rkqrslpd+ grgwhesrkqvmke+gg+krsyymdpqps+ fewhlyeye+n +d++alyrlelk++ + Neem_2555_f_1 309 DISLLKGETIREWLFFDKHRRAFESGTRKQRSLPDHVGRGWHESRKQVMKEYGGQKRSYYMDPQPSDGFEWHLYEYEVNGYDEYALYRLELKISIG 404 ******************************************************************************************** PP VOZ 193 kksakgkvskdsladlqkklgrlta 217 kks+kgk +kdsladlqkk+g+lta Neem_2555_f_1 405 KKSPKGKATKDSLADLQKKMGQLTA 429 *********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEQKVSMQSG SKSKCASASH QLLLENAKNR LSDLQDRFAN LRAARKERRP NDVAVLEEQV 60 YQILREWNSE LTAPSPACSL LGGSLGSFSN DIDRLLQLCE EQDDATSPLA GLVDLKPQPD 120 VQGLHPGTMM PLQEDYLVNN ELQGDCFQEF DNCRDSTSGL HNSAVGISEL TTRLDYYHLN 180 LRQELEQVVL DGNRGTEECE KDVGPNILSN ILPPPSAFMG PKCALWDCTR PALGFEWYKD 240 YCSSFHATLA VHEDSPGISP VLRPGGINLK DSLLFNAVNA KAQGKNVGIP HCEGAATTKC 300 PWNATEIFDI SLLKGETIRE WLFFDKHRRA FESGTRKQRS LPDHVGRGWH ESRKQVMKEY 360 GGQKRSYYMD PQPSDGFEWH LYEYEVNGYD EYALYRLELK ISIGKKSPKG KATKDSLADL 420 QKKMGQLTAE VSPDNKSAVK GQTDNKVKVD STNVVCRRRW DSSLLRFRQI INLLLRARRI 480 IK

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEQKVSMQSG SKSKCASASH QLLLENAKNR LSDLQDRFAN LRAARKERRP NDVAVLEEQV  60
YQILREWNSE LTAPSPACSL LGGSLGSFSN DIDRLLQLCE EQDDATSPLA GLVDLKPQPD  120
VQGLHPGTMM PLQEDYLVNN ELQGDCFQEF DNCRDSTSGL HNSAVGISEL TTRLDYYHLN  180
LRQELEQVVL DGNRGTEECE KDVGPNILSN ILPPPSAFMG PKCALWDCTR PALGFEWYKD  240
YCSSFHATLA VHEDSPGISP VLRPGGINLK DSLLFNAVNA KAQGKNVGIP HCEGAATTKC  300
PWNATEIFDI SLLKGETIRE WLFFDKHRRA FESGTRKQRS LPDHVGRGWH ESRKQVMKEY  360
GGQKRSYYMD PQPSDGFEWH LYEYEVNGYD EYALYRLELK ISIGKKSPKG KATKDSLADL  420
QKKMGQLTAE VSPDNKSAVK GQTDNKVKVD STNVVCRRRW DSSLLRFRQI INLLLRARRI  480
IK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469061.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-170	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A067DW12	0.0	A0A067DW12_CITSI; Uncharacterized protein
STRING	XP_006469061.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-160	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]