PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25415_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 459aa MW: 52147.6 Da PI: 8.8203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25415_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.8	1.3e-16	12	86	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF++ + + ++ k +g i++ +f Cs+e +++++ ++ C+a l++++++ gkw vtk+ ++HnH+++ Neem_25415_f_1 12 FYDTYARRVGFTTHVGQFSRAKPDGPIITWDFACSREVFKRKNVES--------------CNAVLRIERKDPGKWIVTKFIEDHNHSMV 86 9*************************************999877..............************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-14	12	86	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.9E-11	274	307	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.991	274	310	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-8	285	312	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MEFDSEDAAK TFYDTYARRV GFTTHVGQFS RAKPDGPIIT WDFACSREVF KRKNVESCNA 60 VLRIERKDPG KWIVTKFIED HNHSMVTPNK VHYLRPRRHF AGAMKNVSEA LELSGDVYIS 120 MDGNHVSYES NRARNISPVE PNLTGRNVGP WAPVYFRGTF FAALSSNQGV SSFFDGYVNQ 180 QTTIPLFFKQ YERALENSIE KEIEADYDTI CMTPVLKTPS PMEQQAAYLY PKKIFAKFQE 240 ELVETFVYTA NKIEGDGMVS KYRVAKYEHD DKVYIVTLNA SEMKASCSCQ MFEYCGILCR 300 HILTVFTVSN VLTLPTHYIL RRWTRNAKSW IGLDELKTDT QGIENLTLRF NRLCQEAIKY 360 AEEGAMAVET YNAAIAALRE GGKKILAAKK NVAKVSPSGS QGAGNRHEDC SKKIPASVPE 420 MIPSLWPWQE AVPHSFNPLR VLGIGMKTVA RKYLHQFLK

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MEFDSEDAAK TFYDTYARRV GFTTHVGQFS RAKPDGPIIT WDFACSREVF KRKNVESCNA  60
VLRIERKDPG KWIVTKFIED HNHSMVTPNK VHYLRPRRHF AGAMKNVSEA LELSGDVYIS  120
MDGNHVSYES NRARNISPVE PNLTGRNVGP WAPVYFRGTF FAALSSNQGV SSFFDGYVNQ  180
QTTIPLFFKQ YERALENSIE KEIEADYDTI CMTPVLKTPS PMEQQAAYLY PKKIFAKFQE  240
ELVETFVYTA NKIEGDGMVS KYRVAKYEHD DKVYIVTLNA SEMKASCSCQ MFEYCGILCR  300
HILTVFTVSN VLTLPTHYIL RRWTRNAKSW IGLDELKTDT QGIENLTLRF NRLCQEAIKY  360
AEEGAMAVET YNAAIAALRE GGKKILAAKK NVAKVSPSGS QGAGNRHEDC SKKIPASVPE  420
MIPSLWPWQE AVPHSFNPLR VLGIGMKTVA RKYLHQFLK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087525.1	1e-169	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020539840.1	1e-170	protein FAR1-RELATED SEQUENCE 3 isoform X4
Refseq	XP_024952508.1	1e-170	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	1e-108	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A200Q080	0.0	A0A200Q080_9MAGN; FAR1 DNA binding domain
STRING	XP_006471345.1	1e-169	(Citrus sinensis)
STRING	XP_006432553.1	1e-169	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-111	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]