PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25400_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 415aa MW: 47287.2 Da PI: 8.7295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25400_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	173	196	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H Neem_25400_f_1 173 YLCRVCGRRFYTNEKLVNHFKQiH 196 56*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	4.7E-7	152	197	IPR029060	PIN domain-like
SuperFamily	SSF57667	3.03E-5	170	199	No hit	No description
PROSITE profile	PS50157	12.154	173	201	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	196	IPR007087	Zinc finger, C2H2
CDD	cd06167	5.21E-16	190	325	No hit	No description
Pfam	PF01936	5.0E-7	245	325	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	4.7E-7	248	313	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MGEANRFNPI SQGFPKFHNI CNTANFTSLK SLNPLISFSR SFHLGSQNPL STLAPEHAHD 60 NVGIFWDLDN KPPISVPPFE AAIKLKKSIS SFGVVRYMVA YANSHAFSYV PQVVAAIKLK 120 KSISSFGVVR YMVAYANSHA FSYVPQVVRE QRKERKLLNQ LENKGVIKPA EPYLCRVCGR 180 RFYTNEKLVN HFKQIHEREQ KKRLNQIESA RGKRRVHLVA KYSMKMEKYK RAARDVVTPK 240 VGYGLADELK RAGFWVRTVC DKPQAADVAL RDHMVDMMDK RRVECLVLVS DDSDFVEVLK 300 EAKLRCLKTV VVGDINDGAL KRVADAGFCW RDILMGKAKK EALSVVDKWK DQDILKMLEW 360 KYNPEVEKNA CDWDDDESED ADIDNIAGAN DAQCMQKEDS GVWWELESSD VDETS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MGEANRFNPI SQGFPKFHNI CNTANFTSLK SLNPLISFSR SFHLGSQNPL STLAPEHAHD  60
NVGIFWDLDN KPPISVPPFE AAIKLKKSIS SFGVVRYMVA YANSHAFSYV PQVVAAIKLK  120
KSISSFGVVR YMVAYANSHA FSYVPQVVRE QRKERKLLNQ LENKGVIKPA EPYLCRVCGR  180
RFYTNEKLVN HFKQIHEREQ KKRLNQIESA RGKRRVHLVA KYSMKMEKYK RAARDVVTPK  240
VGYGLADELK RAGFWVRTVC DKPQAADVAL RDHMVDMMDK RRVECLVLVS DDSDFVEVLK  300
EAKLRCLKTV VVGDINDGAL KRVADAGFCW RDILMGKAKK EALSVVDKWK DQDILKMLEW  360
KYNPEVEKNA CDWDDDESED ADIDNIAGAN DAQCMQKEDS GVWWELESSD VDETS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440402.1	0.0	uncharacterized protein LOC18046927
TrEMBL	V4TJU6	0.0	V4TJU6_9ROSI; Uncharacterized protein
STRING	XP_006440402.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11444	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-142	C2H2 family protein