PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24692_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 450aa    MW: 51723.3 Da    PI: 5.0722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24692_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.3e-32161452102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...................... CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...................... 74 
                     Fl+k+ye+++d+ +++l+sws++g sf+v+ + +fa+++LpkyFkh+nf+SFvRQLn+Y F +++++e   +                       
  Neem_24692_f_2  16 FLTKTYEMVDDPITNSLVSWSQSGCSFIVWSPPDFARDLLPKYFKHNNFSSFVRQLNTYHFGSTSRKEIPVDFcprrkerftfmvnsysslftvf 110
                     9***************************************************************999977444999999*****99999999988 PP

                     .......XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  75 .......kekiweFkhksFkkgkkellekikrkks 102
                            ++++weF++++F +g+++ll++i r+k 
  Neem_24692_f_2 111 eqgfrkiDPDQWEFANEEFIRGQRHLLKNIYRRKP 145
                     877765449***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-291281IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-4912143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-3613143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-2816143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-29110143IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDESQGQGSS NAPAPFLTKT YEMVDDPITN SLVSWSQSGC SFIVWSPPDF ARDLLPKYFK  60
HNNFSSFVRQ LNTYHFGSTS RKEIPVDFCP RRKERFTFMV NSYSSLFTVF EQGFRKIDPD  120
QWEFANEEFI RGQRHLLKNI YRRKPVHSHS TQNHCSNPLT ETERNEFQGK IERLRGENRL  180
LQLELQRRET ENQGFEFQVQ TLRERLKYLE HRQMQLMSFV SQLLKKPGFS SALMHQTQVH  240
NKKRRLLMPN YLGDVSFADK NWSSSDDSIP NRDEVSSPIL NLERIDKLES SVNFWTCFLY  300
GIDVAFSPEE YDFGVLQPIS EVTDTEEGMS SEPSSPISNL SSPQSMDIHS SSPKLAASEN  360
HSGGVAEDEA SRKEVAESAN SSYKIGVNDL FWEQFLTETP ASSTNTQEEI QQESESGDVE  420
IKPADTKNFW WNTDNLDNLT RNFGKLTSAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-23814313120Heat shock factor protein 1
5d5u_B8e-23814322129Heat shock factor protein 1
5d5v_B8e-23814322129Heat shock factor protein 1
5d5v_D8e-23814322129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448027.11e-177heat stress transcription factor A-4b
RefseqXP_006492257.11e-177heat stress transcription factor A-4b-like
TrEMBLA0A2H5PHE61e-176A0A2H5PHE6_CITUN; Uncharacterized protein
TrEMBLV4U5S91e-176V4U5S9_9ROSI; Uncharacterized protein
STRINGXP_006492257.11e-176(Citrus sinensis)
STRINGXP_006448027.11e-176(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-67heat shock transcription factor A4A