PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24687_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 83aa MW: 9290.33 Da PI: 4.7472 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.5 | 4.5e-13 | 49 | 74 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Neem_24687_f_1 49 DEADCIHYLRTGFCGYGSRCRFNHPR 74 6899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.8E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.286 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-7 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MERYGRVSGG SQSDPSLEWT APGTETGLEE PMWQLGLGAG VESYPERPDE ADCIHYLRTG 60 FCGYGSRCRF NHPRDRGMMS IVF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826123.1 | 5e-40 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q9SQU4 | 2e-31 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A2I4F3A9 | 1e-38 | A0A2I4F3A9_JUGRE; zinc finger CCCH domain-containing protein 34-like | ||||
STRING | XP_007147888.1 | 1e-37 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25792 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 9e-34 | C3H family protein |
Publications ? help Back to Top | |||
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