PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2431_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 640aa MW: 73667.1 Da PI: 8.2198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2431_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.3e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l Neem_2431_f_1 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLDHNHIL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-31	262	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	522	558	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-4	530	554	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-4	533	560	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MEEATLRSER VPEDECGESQ KEGEGETTVF NSANGVIEGK KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RVLEVTLDHN HILGAKVHRS IKKIGSGTKR NSLSGSDTEG RTIKLYRALV 180 IDAGGNENLN TVEREVRNFS NHPNQLNLKK GDSQAIYNYL CRMQLTNPNF FYLMDLNDEG 240 HLRNVFWIDG RSRASCGYFS DVVYVDNTYL SSKYEIPLVA FVGINHHGQS VLLGCGLLAG 300 ETTESYIWLF KAWVTCASGR SPQTIITDRC KLLQSAVQEV FPKAHHRFGL SHIMKKVPEK 360 LGGLRNYDAI RRALLKAVYE SLKVIEFETA WGFMVQRFGV VDHEWLRSLY EDRVQWAPVY 420 LKDTFFAGLC AAQPALQKKH KEENLADIES RTVSPTLKTR CPFELQLSKV YTREIFKKFQ 480 LEVEEMYSCF STTQLHVDGP IVIFLVKERV LGEGNRREIR DYEVLYNRTA GEVRCICSCL 540 NFYGYLCRHA LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHGSSDVDA TDRVLWFNQL 600 YKSALQVVEE GVISLDHCKV ALQAFEESLS RVHDVEEKQE

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MEEATLRSER VPEDECGESQ KEGEGETTVF NSANGVIEGK KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVTLDHN HILGAKVHRS IKKIGSGTKR NSLSGSDTEG RTIKLYRALV  180
IDAGGNENLN TVEREVRNFS NHPNQLNLKK GDSQAIYNYL CRMQLTNPNF FYLMDLNDEG  240
HLRNVFWIDG RSRASCGYFS DVVYVDNTYL SSKYEIPLVA FVGINHHGQS VLLGCGLLAG  300
ETTESYIWLF KAWVTCASGR SPQTIITDRC KLLQSAVQEV FPKAHHRFGL SHIMKKVPEK  360
LGGLRNYDAI RRALLKAVYE SLKVIEFETA WGFMVQRFGV VDHEWLRSLY EDRVQWAPVY  420
LKDTFFAGLC AAQPALQKKH KEENLADIES RTVSPTLKTR CPFELQLSKV YTREIFKKFQ  480
LEVEEMYSCF STTQLHVDGP IVIFLVKERV LGEGNRREIR DYEVLYNRTA GEVRCICSCL  540
NFYGYLCRHA LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHGSSDVDA TDRVLWFNQL  600
YKSALQVVEE GVISLDHCKV ALQAFEESLS RVHDVEEKQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492084.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_006492085.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V4SU14	0.0	V4SU14_9ROSI; Uncharacterized protein
STRING	XP_006492084.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]