PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2420_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 302aa    MW: 31958 Da    PI: 6.173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2420_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10151195554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Neem_2420_f_2 151 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 195
                    99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-15148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MANNPNESSS DDFLEQILGI PNFASAESGL TANDGGLAAT AGAGSPMMLQ LSSGDGSGHI  60
SALGGGVSGG FHGQGFPLGL SLEQGKGGFL KPEEASGSGK RFHEELVDSR ASTVKNVFHG  120
QPMPSPVPAA PHPPAMRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD  180
RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEDESG EGGRNQPAWE  240
KWSNDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAT AIYHSQPPES PNLVKPETNP  300
PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.10.0transcription factor UNE12 isoform X2
SwissprotO227681e-139UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067JPB11e-170A0A067JPB1_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_52.971e-178(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]