PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_24176_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HSF | ||||||||
Protein Properties | Length: 664aa MW: 76266.3 Da PI: 8.611 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.5 | 4.4e-33 | 25 | 125 | 2 | 103 |
HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++le++ +k+++sw+++gn f+v+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk++ ++ weFkh++F++ Neem_24176_f_2 25 FLSKTYDLLEEAdvgadyvdGNKKIVSWNAEGNGFIVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKTSPKQ---------WEFKHEKFQR 110 9*********666666666699**************************************************9988.........********** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g +++l +i rkks+ Neem_24176_f_2 111 GCRHMLAEITRKKSD 125 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.3E-35 | 15 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.94E-26 | 21 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-42 | 21 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-28 | 25 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF48452 | 2.28E-6 | 306 | 367 | IPR011990 | Tetratricopeptide-like helical domain |
Gene3D | G3DSA:1.25.40.10 | 1.0E-12 | 309 | 522 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 10.983 | 315 | 349 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 5.8E-6 | 318 | 347 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.3E-7 | 318 | 350 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.843 | 350 | 384 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 4.7E-8 | 352 | 396 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.2E-5 | 353 | 385 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.377 | 385 | 419 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.689 | 421 | 451 | IPR002885 | Pentatricopeptide repeat |
SuperFamily | SSF48452 | 2.28E-6 | 428 | 480 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 6.106 | 456 | 486 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.555 | 491 | 525 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.045 | 495 | 522 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0031 | 495 | 526 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.396 | 526 | 560 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.0013 | 531 | 557 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 1.0E-12 | 559 | 592 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 5.119 | 561 | 595 | IPR002885 | Pentatricopeptide repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MDRNLLEVKE GTRQQSPRTK NPAPFLSKTY DLLEEADVGA DYVDGNKKIV SWNAEGNGFI 60 VWSPAEFSEL MLPRYFKHNN FSSFIRQLNT YGFKKTSPKQ WEFKHEKFQR GCRHMLAEIT 120 RKKSDPSVFP AYLKASNEGI TTTTAMEEYN SNNNSNHLLL MEENENLRKE KLQLQMQIAE 180 FKALEIKLLD CVSQYMGVHQ NKVRRFYYQN RVNKTTLYSI ISPLGNPKTS VEPELENWVK 240 AGNKVRVGEL QRIIRDLRKR KRFPHALEVS EWMNRKRICV FSPSEHAVQL DLIGRVHGFL 300 SAESYFNNLK EHEKNDKTYG ALLNCYVRQR QTEKALSHFQ KMKEMGFSLS SLSYNDIMCL 360 YTKIGQYEKV PSVLTEMKEQ NVSPDNFSYR ICINSYGART NLEGMEKILR EMESQSHIVM 420 DWNTYAVAAN FYIKANCNDK ALDVLKKAEE RLDKKDGTGY NFLISLYASL GNKAEVLRLW 480 ELEKTDCKRY INRDYITMLE SLVKLGELEE AEKVLKGWES SGNCYDTRLP NTVIIGYCNN 540 GFHEKAEAIL EDLTDKGKVT TPNSWALVAA GYLNAGKREK GFECMKIALS LHVEGKGWKP 600 NPKLMTSILS KLGDEGSVQD VEAFVALLRG AEYCEKHATV TLGPWFLFAL KELVGCISVL 660 VKAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5i9f_A | 6e-19 | 236 | 620 | 5 | 429 | pentatricopeptide repeat protein dPPR-U10 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449328.1 | 0.0 | pentatricopeptide repeat-containing protein At4g21705, mitochondrial | ||||
Swissprot | Q84JR3 | 0.0 | PP334_ARATH; Pentatricopeptide repeat-containing protein At4g21705, mitochondrial | ||||
TrEMBL | A0A498JYW4 | 0.0 | A0A498JYW4_MALDO; Uncharacterized protein | ||||
STRING | EOY28262 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5463 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 1e-34 | heat shock factor 1 |
Publications ? help Back to Top | |||
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