PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23883_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 359aa    MW: 40408.8 Da    PI: 7.4986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23883_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C ++++ G C+yG+rC++ H+
  Neem_23883_f_1 34 ICTYYQK-GVCSYGSRCRYEHV 54
                    7******.***********997 PP
2zf-CCCH19.51.7e-06133155326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  Neem_23883_f_1 133 RSICS-FAAAGNCPRGEKCPHIHG 155
                     67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.54128IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2532956IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-53453IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727130157IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021131156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4135156IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.35E-13188263No hitNo description
Gene3DG3DSA:3.30.40.109.9E-10194258IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00311198258No hitNo description
PfamPF000973.7E-7199256IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238199257IPR001841Zinc finger, RING-type
SMARTSM001843.2E-7199256IPR001841Zinc finger, RING-type
PROSITE patternPS005180223232IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010310.962286318IPR000571Zinc finger, CCCH-type
SMARTSM0035611286314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GVCSYGSRCR YEHVKPSRPE  60
SSASSSSTIS LASRATSSGV TTVPGVLPEL SALSRPYIPP NKPAWSLESI CDDYLENGEV  120
EELEPRNLKP ADRSICSFAA AGNCPRGEKC PHIHGDMCPT CGKHCLHPFR PEEREEHMKS  180
CEKKQKHLEA LRRSQEIECS VCLDRVLSKP TAAERKFGLL SECDHPFCIS CIRNWRSSSP  240
TSGMDVNTAL RACPICRKLS YFVIPSVIWY YSPEEKQEII ESYKAKLRSI DCKHFNFGNG  300
NCPFGTSCFY KLVVHHNGPK DVEMRDEAEM EQVYHCSAVN VRGEGQTTQS SEVVYRDAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439133.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X4
RefseqXP_024041558.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-158C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV4SWS70.0V4SWS7_9ROSI; Uncharacterized protein
TrEMBLV4TR580.0V4TR58_9ROSI; Uncharacterized protein
STRINGXP_006439134.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-143C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]