PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2377_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 327aa    MW: 37023.5 Da    PI: 6.1676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2377_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.42.7e-101559349
            NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                   +GfrF+Ptdee++   Lk k  + ++++ ++ike++ y+++Pw+Lp 
  Neem_2377_f_1 15 RGFRFKPTDEEII-LLLKMKRLDPDFSV-QTIKEIEFYNFDPWELPG 59
                   7************.67888888888888.78**************93 PP
2NAM31.84e-106412074128
            NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                    ++++tksgyWk tg+  ++++k ++ ++g kk+L f  ++ + k  k +W+mhe r 
  Neem_2377_f_1  64 QSKKTKSGYWKITGRGSDLKTKnSKGVIGSKKILSFCpRAPSLKKAKPEWIMHEIRT 120
                    45689**********999999856678**********444555667899*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-2612136IPR003441NAC domain
PROSITE profilePS5100521.09113138IPR003441NAC domain
PfamPF023654.3E-1315119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKNGNGNGNG NRQSRGFRFK PTDEEIILLL KMKRLDPDFS VQTIKEIEFY NFDPWELPGF  60
SGIQSKKTKS GYWKITGRGS DLKTKNSKGV IGSKKILSFC PRAPSLKKAK PEWIMHEIRT  120
KDGPFYKDDF VVCRLERRRD KKPSISTSND RESSQEHMVV VQDASPESVL PPNRPLLLPN  180
QCCDGYGDLD IESLPELQSP TYPKPGWSYS NSPINGCDLL NSRCHREPES LPELQSPTYP  240
KPGWSYSNSP INGCDLLNSR CDREQVNDHI NSRRAFQTQN ECFFGETGQT LCPEFNSSKS  300
DGGILLEDDS EMDTETINAW VNSLLVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-161613920166NO APICAL MERISTEM PROTEIN
1ut4_B2e-161613920166NO APICAL MERISTEM PROTEIN
1ut7_A2e-161613920166NO APICAL MERISTEM PROTEIN
1ut7_B2e-161613920166NO APICAL MERISTEM PROTEIN
3swm_A3e-161613923169NAC domain-containing protein 19
3swm_B3e-161613923169NAC domain-containing protein 19
3swm_C3e-161613923169NAC domain-containing protein 19
3swm_D3e-161613923169NAC domain-containing protein 19
3swp_A3e-161613923169NAC domain-containing protein 19
3swp_B3e-161613923169NAC domain-containing protein 19
3swp_C3e-161613923169NAC domain-containing protein 19
3swp_D3e-161613923169NAC domain-containing protein 19
4dul_A2e-161613920166NAC domain-containing protein 19
4dul_B2e-161613920166NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142ERRRDKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015382149.11e-59NAC domain-containing protein 40-like, partial
STRINGXP_006465074.12e-57(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-20NTM1-like 8