PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23750_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 252aa    MW: 27758.7 Da    PI: 4.4832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23750_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-1975125155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Neem_23750_f_1  75 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 125
                     68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1375125IPR001471AP2/ERF domain
PROSITE profilePS5103223.40676133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3276134IPR001471AP2/ERF domain
SMARTSM003802.6E-3576139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2176134IPR016177DNA-binding domain
PRINTSPR003672.6E-107788IPR001471AP2/ERF domain
CDDcd000184.33E-3377135No hitNo description
PRINTSPR003672.6E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAPSEPNNFN SEAESSTSNS SSFTSSPPSP SSVTTCFSKS QIQNTKDRKR PKRKRASEHS  60
TAAATSTSAA GSKHPVYRGV RMRSWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA  120
LSIKGDSAVL NFPDLVDFLP RPVSLLPRDI QTAATKAASM IEFDSLSTAS PSPSSEEVSA  180
ESEELAEIVE LPNIEGTFEF DSAESNSELI AFNDLFDMWV YPPQDFCDEF SEHILQAEEL  240
IPDNFEASSI WD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2066133472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426907.12e-97ethylene-responsive transcription factor ERF036
SwissprotQ9LYD31e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLV4SHT95e-96V4SHT9_9ROSI; Uncharacterized protein
STRINGXP_006426907.18e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]