PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_23394_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 159aa MW: 18172.8 Da PI: 5.1031

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_23394_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.5e-31	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ gCpvkk+ver++edp++v++tYeg H+h+ Neem_23394_f_2 98 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDREDPSYVITTYEGVHTHQ 156 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-34	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	91	157	IPR003657	WRKY domain
PROSITE profile	PS50811	29.551	93	158	IPR003657	WRKY domain
SMART	SM00774	5.8E-37	98	157	IPR003657	WRKY domain
Pfam	PF03106	5.3E-25	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSNSNFLPQD SPESDYAEQT NFELSDYLTF DEWSEEEHAS MIFGSVQNPV YRANEVIEPG 60 ASSSHQEGPS NSDSGSGREK KQVKERVAFK TKSEIEILDD GFKWRKYGKK MVKNSPNPRN 120 YYKCSVDGCP VKKRVERDRE DPSYVITTYE GVHTHQSTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	88	155	7	74	Probable WRKY transcription factor 4
2lex_A	3e-25	88	155	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	3e-32	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	3e-32	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474454.1	4e-91	probable WRKY transcription factor 50 isoform X1
Refseq	XP_024033930.1	2e-91	probable WRKY transcription factor 50 isoform X1
Swissprot	Q8VWQ5	4e-48	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A067GDY4	2e-95	A0A067GDY4_CITSI; Uncharacterized protein
TrEMBL	V4UPS5	2e-95	V4UPS5_9ROSI; Uncharacterized protein
STRING	XP_006453040.1	3e-96	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-50	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]