PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2269_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 494aa MW: 56527.6 Da PI: 6.2664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2269_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	380	403	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C ++F ++ ++ H H Neem_2269_f_2 380 YTCPKCEEVFLTSQLFAAHVAAsH 403 9******************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	382	403	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MPTNFNSFNS NHTFGPNSSR LLPMNFDFNN HENGRGLDVQ ILMNNSNDSQ NPVNFGENND 60 HSIPRVSSSS LIGLGQFGFR QRISDVITRN NYPSQHRVKV QSVIDYYPVE NQPGVSEVTV 120 TEIVKTKFLT SNATRDRLLP PNDPFISAAQ QEPIFPNRSL LMTNQPFLQP SNERNEYLLD 180 GSNFLQNRAQ IQSYLPNANL FLMNNDPLVT TRNEQSYPKF TQNHISSPRM SATMPSQVNS 240 PTTETYQPFQ NVYKQNPTQN QPDFNLVNLG DLSSMAKNNE ILDPEPVNVF VAENELDENQ 300 NPSGDQSQQP INELLDECYR NLVGNTSAPL RTPTLPKKVP RRNLVAISNN DKDEEETESE 360 VEDNYDGRTH SLSCQKYGPY TCPKCEEVFL TSQLFAAHVA ASHYRFETFA ERNKRLTAKY 420 RRKNLRLVHS DDGITIVPDQ SFKNVRNRRR KGERIVIRRT ENDRRVWRKG KNVIEGTAAE 480 GNSLFEVEIK EEYE

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MPTNFNSFNS NHTFGPNSSR LLPMNFDFNN HENGRGLDVQ ILMNNSNDSQ NPVNFGENND  60
HSIPRVSSSS LIGLGQFGFR QRISDVITRN NYPSQHRVKV QSVIDYYPVE NQPGVSEVTV  120
TEIVKTKFLT SNATRDRLLP PNDPFISAAQ QEPIFPNRSL LMTNQPFLQP SNERNEYLLD  180
GSNFLQNRAQ IQSYLPNANL FLMNNDPLVT TRNEQSYPKF TQNHISSPRM SATMPSQVNS  240
PTTETYQPFQ NVYKQNPTQN QPDFNLVNLG DLSSMAKNNE ILDPEPVNVF VAENELDENQ  300
NPSGDQSQQP INELLDECYR NLVGNTSAPL RTPTLPKKVP RRNLVAISNN DKDEEETESE  360
VEDNYDGRTH SLSCQKYGPY TCPKCEEVFL TSQLFAAHVA ASHYRFETFA ERNKRLTAKY  420
RRKNLRLVHS DDGITIVPDQ SFKNVRNRRR KGERIVIRRT ENDRRVWRKG KNVIEGTAAE  480
GNSLFEVEIK EEYE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	1e-17	C2H2-like zinc finger protein