PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2242_f_11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 434aa    MW: 49297.6 Da    PI: 5.8915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2242_f_11genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.51.6e-77554301374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetsekn.......sseelaalklfsev 87 
                     lv+lLl  Ae + s++  +a++lL +  + +  +g+++qR++++f +AL++rl+r++ ++ +k ++ +e  +         + ++ +a+ + ++ 
  Neem_2242_f_11  55 LVHLLLVSAEKIGSQQYDRASKLLDTCDHFSPTTGNSVQRMVHHFSKALRERLNRETGRIiSKEVKGEEIMK-LilnpeeqMGSSNHAYIACYKQ 148
                     689****************************************************55555155444443322.1344433377777888889999 PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                      P+++ + ++  qaI e v+  +r+HiiD+ i  G++ + L+qaLa+++e p   l++T +g    +s+++leetg+rL  fAe+l++pf+f++ 
  Neem_2242_f_11 149 VPFYQATLFAGIQAIIENVALVKRIHIIDLAIRSGTHCMVLMQALATQQECPLeLLKMTMIGV---TSNQKLEETGKRLVYFAETLHLPFSFKIA 240
                     **********************************************9986554499*******...68**************************9 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     +  +l+dl+ + +++++gE++aV +   l ++  ++ +le    +++ ++++++P v+ v+e ea+h  ++F +rf+eal +ysa fd+le+ +p
  Neem_2242_f_11 241 MLADLQDLKEDIFEINEGEVIAVYSPALLSYMATQHDHLE----TLITVLRNINPCVMAVIEVEANHHLQTFEDRFFEALFHYSAAFDCLEVCMP 331
                     999************************9999985555555....5************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                     r + +ri  E+ + gr+i+n+va+eg+er+ rh +   Wr+ ++++G+ +++ls +    a+l++r+++ +     + + ++l++gWk+ p vs+
  Neem_2242_f_11 332 RCDTNRIIFEEICTGRHIRNIVAHEGEERVIRHMKIDGWRDFFNRFGLLEAELSASSLFPAELVVRNFAcGSSCAFDRNGECLIFGWKGVPHVSL 426
                     *********************************************************************88888999999*************** PP

            GRAS 371 SaWr 374
                     S+W+
  Neem_2242_f_11 427 SVWK 430
                     ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.61929409IPR005202Transcription factor GRAS
PfamPF035145.7E-7555430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAGFRALSTL DVIRVAIKSY LQSSSQDSSD LSQHDHVCWS SSVSFSEEDI KDVELVHLLL  60
VSAEKIGSQQ YDRASKLLDT CDHFSPTTGN SVQRMVHHFS KALRERLNRE TGRIISKEVK  120
GEEIMKLILN PEEQMGSSNH AYIACYKQVP FYQATLFAGI QAIIENVALV KRIHIIDLAI  180
RSGTHCMVLM QALATQQECP LELLKMTMIG VTSNQKLEET GKRLVYFAET LHLPFSFKIA  240
MLADLQDLKE DIFEINEGEV IAVYSPALLS YMATQHDHLE TLITVLRNIN PCVMAVIEVE  300
ANHHLQTFED RFFEALFHYS AAFDCLEVCM PRCDTNRIIF EEICTGRHIR NIVAHEGEER  360
VIRHMKIDGW RDFFNRFGLL EAELSASSLF PAELVVRNFA CGSSCAFDRN GECLIFGWKG  420
VPHVSLSVWK FQQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-286342926377Protein SCARECROW
5b3h_D4e-286342926377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488994.20.0DELLA protein GAI-like
TrEMBLV4U0870.0V4U087_9ROSI; Uncharacterized protein
STRINGXP_006419399.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2004936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-48RGA-like 2