PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2242_f_11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 434aa MW: 49297.6 Da PI: 5.8915 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 252.5 | 1.6e-77 | 55 | 430 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.ykalppsetsekn.......sseelaalklfsev 87 lv+lLl Ae + s++ +a++lL + + + +g+++qR++++f +AL++rl+r++ ++ +k ++ +e + + ++ +a+ + ++ Neem_2242_f_11 55 LVHLLLVSAEKIGSQQYDRASKLLDTCDHFSPTTGNSVQRMVHHFSKALRERLNRETGRIiSKEVKGEEIMK-LilnpeeqMGSSNHAYIACYKQ 148 689****************************************************55555155444443322.1344433377777888889999 PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 P+++ + ++ qaI e v+ +r+HiiD+ i G++ + L+qaLa+++e p l++T +g +s+++leetg+rL fAe+l++pf+f++ Neem_2242_f_11 149 VPFYQATLFAGIQAIIENVALVKRIHIIDLAIRSGTHCMVLMQALATQQECPLeLLKMTMIGV---TSNQKLEETGKRLVYFAETLHLPFSFKIA 240 **********************************************9986554499*******...68**************************9 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 + +l+dl+ + +++++gE++aV + l ++ ++ +le +++ ++++++P v+ v+e ea+h ++F +rf+eal +ysa fd+le+ +p Neem_2242_f_11 241 MLADLQDLKEDIFEINEGEVIAVYSPALLSYMATQHDHLE----TLITVLRNINPCVMAVIEVEANHHLQTFEDRFFEALFHYSAAFDCLEVCMP 331 999************************9999985555555....5************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370 r + +ri E+ + gr+i+n+va+eg+er+ rh + Wr+ ++++G+ +++ls + a+l++r+++ + + + ++l++gWk+ p vs+ Neem_2242_f_11 332 RCDTNRIIFEEICTGRHIRNIVAHEGEERVIRHMKIDGWRDFFNRFGLLEAELSASSLFPAELVVRNFAcGSSCAFDRNGECLIFGWKGVPHVSL 426 *********************************************************************88888999999*************** PP GRAS 371 SaWr 374 S+W+ Neem_2242_f_11 427 SVWK 430 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.619 | 29 | 409 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-75 | 55 | 430 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAGFRALSTL DVIRVAIKSY LQSSSQDSSD LSQHDHVCWS SSVSFSEEDI KDVELVHLLL 60 VSAEKIGSQQ YDRASKLLDT CDHFSPTTGN SVQRMVHHFS KALRERLNRE TGRIISKEVK 120 GEEIMKLILN PEEQMGSSNH AYIACYKQVP FYQATLFAGI QAIIENVALV KRIHIIDLAI 180 RSGTHCMVLM QALATQQECP LELLKMTMIG VTSNQKLEET GKRLVYFAET LHLPFSFKIA 240 MLADLQDLKE DIFEINEGEV IAVYSPALLS YMATQHDHLE TLITVLRNIN PCVMAVIEVE 300 ANHHLQTFED RFFEALFHYS AAFDCLEVCM PRCDTNRIIF EEICTGRHIR NIVAHEGEER 360 VIRHMKIDGW RDFFNRFGLL EAELSASSLF PAELVVRNFA CGSSCAFDRN GECLIFGWKG 420 VPHVSLSVWK FQQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-28 | 63 | 429 | 26 | 377 | Protein SCARECROW |
5b3h_D | 4e-28 | 63 | 429 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488994.2 | 0.0 | DELLA protein GAI-like | ||||
TrEMBL | V4U087 | 0.0 | V4U087_9ROSI; Uncharacterized protein | ||||
STRING | XP_006419399.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20049 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-48 | RGA-like 2 |