PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22363_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28012.9 Da PI: 9.9238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133 | 2.1e-41 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp G+rF+Ptdeelvv+yLk+kv g +l++ +vi+e+d+++++Pw+Lp + +e++ yfFs++++ +a++++++ a+ sgyWk gkd+++l+ Neem_22363_f_2 16 LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SVIPEFDVFQTDPWSLPGDL--KEQKRYFFSNNRNGNANDNKSKIAAGSGYWKPIGKDRQILAP 107 699***************************.99***************665..66899************999999******************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg++ktLvf +g++ + ++t+Wvmheyrl Neem_22363_f_2 108 gSGQAVGIRKTLVFSQGKRAQQTQTQWVMHEYRL 141 78889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-47 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.981 | 16 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-23 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MYMEKPNFVV NGGVKLPIGY RFRPTDEELV VHYLKRKVFG LPLPASVIPE FDVFQTDPWS 60 LPGDLKEQKR YFFSNNRNGN ANDNKSKIAA GSGYWKPIGK DRQILAPGSG QAVGIRKTLV 120 FSQGKRAQQT QTQWVMHEYR LAGAATNPDS IYLIPKMEIG DWVVYRIFQR KRKPKKHRAV 180 SNQTTNVEVT PRPSCINFTI EADQSDLLGP PQPSPSSSEI TADVIPATTV LDQEETSGYG 240 YSCSCTRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 14 | 176 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 175 | QRKRKPKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447003.1 | 1e-105 | NAC domain-containing protein 83 | ||||
Refseq | XP_006468841.1 | 1e-105 | NAC domain-containing protein 83-like | ||||
TrEMBL | V4TIL5 | 1e-104 | V4TIL5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006468841.1 | 1e-105 | (Citrus sinensis) | ||||
STRING | XP_006447003.1 | 1e-105 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 7e-54 | NAC domain containing protein 84 |