PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22176_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 242aa MW: 26408.2 Da PI: 6.2486 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 71 | 1.7e-22 | 5 | 41 | 27 | 63 |
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 PryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Neem_22176_f_1 5 DSPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 41 67*******************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 17.839 | 1 | 38 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-17 | 3 | 38 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-10 | 7 | 33 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASCDSPRYF CKSCRRYWTK GGTLRNVPVG GGCRKNKRSS SSSKRSQDQQ LSSNTNPLNG 60 FPQMSYDSND LSLAFARLQK QTGGQLGFDH ENDFSILGNP TTTHCDILGN PSISSASAAT 120 PPFLDALRSG FLDTQNNFQN LYYGYGTGNM GEMDNNGVGV SAEMLMPFGD QMSSNATTTA 180 VTVTTMKQEL CNSRESENKV LWGFPWQLNA DANMGNELDS GKESWNTGLT STWHGLLNSP 240 LM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214603.1 | 1e-111 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A0K8K635 | 1e-109 | A0A0K8K635_CAJCA; Dof protein | ||||
TrEMBL | A0A151TN62 | 1e-109 | A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment) | ||||
STRING | XP_002532252.1 | 1e-107 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6960 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 2e-28 | Dof family protein |