PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_22147_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 188aa MW: 21351.3 Da PI: 9.4506

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22147_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.7	7.1e-15	109	153	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +pr+ W+ eLH++Fv+a A+Pk+ilelm+v+gL +e+v SHL k+R Neem_22147_f_1 109 RPRVLWSVELHQQFVSA---------AVPKRILELMNVPGLKRENVGSHLAKFR 153 59***********98.........9************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.11E-7	1	47	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	6.8E-11	1	59	No hit	No description
PROSITE profile	PS50110	15.215	1	39	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF46689	2.51E-9	106	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-14	107	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-9	110	153	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSADGRVSAV MKGIHHGACD YLVKPIREEE LKNIWQHVIQ KKWNGNEKAK HSGSFEDNDR 60 QSKIIDEVEY ASFANEGTEG VLKAQKNRIC AKEEDDGELE NEDPSTKRRP RVLWSVELHQ 120 QFVSAAVPKR ILELMNVPGL KRENVGSHLA KFRPYLKRLN GVQGGISNAF RALIETNMKL 180 GSLRKFDI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448148.1	2e-93	two-component response regulator ORR21 isoform X2
Refseq	XP_006469260.1	2e-93	two-component response regulator ORR21 isoform X2
Swissprot	A2XE31	2e-61	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	2e-61	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	A0A067F3V5	2e-92	A0A067F3V5_CITSI; Two-component response regulator
TrEMBL	A0A067F3W0	2e-92	A0A067F3W0_CITSI; Two-component response regulator
STRING	XP_006448147.1	8e-93	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8150	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01760.1	4e-48	response regulator 14

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]