PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2178_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 492aa    MW: 54505.2 Da    PI: 7.0082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2178_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-1760104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++v+a k++G   W++I +++g ++t+ q++s+ qk+
    Neem_2178_f_1  60 RERWTEEEHKKFVEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 104
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1754108IPR009057Homeodomain-like
PROSITE profilePS5129420.90855109IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-957104IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-1758107IPR006447Myb domain, plants
SMARTSM007172.0E-1359107IPR001005SANT/Myb domain
PfamPF002492.5E-1460103IPR001005SANT/Myb domain
CDDcd001678.69E-1162105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAVQDQCGGT HSNSAFSTGN EISYDAGLHP VTGLEIKDQF SCGNDYAPKP RKPYTITKQR  60
ERWTEEEHKK FVEALKLYGR AWRKIEEHVG TKTAVQIRSH AQKFFTKVAR DCSGYSTSPM  120
EPIDIPPPRP KRKPMHPYPR KLVYPRVRES PNPELPRRSS SPNLSTSEPE NQSPTSVFSA  180
VGSDAFGSSD SNSPNDSLSP VSPVAPAHLA GFTVSQPNSS PAENIPPSPV LETTDSVPDE  240
QSPMDVLKLG LSSQEFAKEG VPTRTLKLFG TTVLVTDSQR PMSSTPGACK LSPQHVNEGK  300
PLQLIPLKLS ESPAGDTKCF QKQLLHTGSE APCCIHCPDE NLSLIEGGSG ARLPRWTFCG  360
GILFPITPYG QPEPMKMHLD SILKEVQDKE FWKEGSWTGS NSKSINEDDN FDKNSDVETQ  420
SCQQPLDKEE KGSDKVFELK PSENSAFSVI RSSPMKHIKG FVPYKKRMAE RDHQLSAVTG  480
DEREEQRLRH CY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481961.10.0protein REVEILLE 1
TrEMBLA0A2H5MZZ00.0A0A2H5MZZ0_CITUN; Uncharacterized protein
STRINGXP_006481961.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.19e-58MYB_related family protein